UHGV-0096706

Genome information

Genome length 16,803 bps

CDS count 19

Completeness 89.01% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096706
vOTU ID	vOTU-034641
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221995
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.29
Jumbo phage	No

Genome content
Genome length	16,803 bps
GC content	36.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	92.68%
Average CDS length	820.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096706_1	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0096706_1	PHROG	phrog_2234	tail spike protein	tail
UHGV-0096706_1	eggNOG-mapper	10753.B7SSN3_BPNF	Peptidase_G2, IMC autoproteolytic cleavage domain	NA
UHGV-0096706_1	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0096706_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0096706_2	UniRef90	UniRef90_P68930	Proximal tail tube connector protein	NA
UHGV-0096706_2	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0096706_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0096706_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0096706_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0096706_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0096706_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0096706_4	PHROG	phrog_2248	tail protein	tail
UHGV-0096706_4	UniRef90	UniRef90_A0A843HN65	Caud_tail_N domain-containing protein	NA
UHGV-0096706_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0096706_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0096706_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0096706_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0096706_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0096706_5	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0096706_5	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0096706_5	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0096706_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0096706_8	PHROG	phrog_11037	NA	unknown function
UHGV-0096706_8	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0096706_8	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0096706_8	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0096706_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0096706_8	COG	COG3942	Surface antigen	NA
UHGV-0096706_8	Structural annotation	PF18013	NA	NA
UHGV-0096706_9	PHROG	phrog_7698	endolysin	lysis
UHGV-0096706_9	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-0096706_9	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0096706_9	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0096706_9	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0096706_9	Structural annotation	PF08230	NA	NA
UHGV-0096706_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0096706_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0096706_11	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0096706_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0096706_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0096706_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0096706_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0096706_12	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0096706_12	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0096706_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0096706_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0096706_14	Structural annotation	PF17427	NA	NA
UHGV-0096706_15	Structural annotation	PF17548	NA	NA
UHGV-0096706_16	Structural annotation	PF07865	NA	NA
UHGV-0096706_17	Structural annotation	PF17548	NA	NA