UHGV-0096752

Genome information

Genome length 35,326 bps

CDS count 46

Completeness 65.60% (medium-quality)

geNomad score 0.9418

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096752
vOTU ID	vOTU-023643
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229201
BioSample	SAMEA3708689
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	65.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9418
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.55
Jumbo phage	No

Genome content
Genome length	35,326 bps
GC content	39.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	87.08%
Average CDS length	671.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096752_1	KOfam	K19137	csn2; CRISPR-associated protein Csn2	NA
UHGV-0096752_1	UniRef90	UniRef90_A0A374N1W7	Type II-A CRISPR-associated protein Csn2	NA
UHGV-0096752_1	eggNOG-mapper	1408323.JQKK01000004_gene2273	CRISPR-associated protein (Cas_Csn2)	NA
UHGV-0096752_1	PADLOC	Csn2_WP_117838586.1	NA	CRISPR-CAS
UHGV-0096752_1	Pfam	PF09711	CRISPR-associated protein (Cas_Csn2)	Cas_Csn2
UHGV-0096752_1	NCBIFam	TIGR01866.1	type II-A CRISPR-associated protein Csn2	NA
UHGV-0096752_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0096752_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096752_3	UniRef90	UniRef90_A0A1C6GZH6	LexA repressor	NA
UHGV-0096752_3	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0096752_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0096752_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096752_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0096752_3	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0096752_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0096752_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096752_4	UniRef90	UniRef90_A0A1C6GZN2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0096752_4	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-0096752_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096752_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096752_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0096752_7	PHROG	phrog_310	transposase	integration and excision
UHGV-0096752_7	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0096752_7	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0096752_7	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0096752_7	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0096752_7	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0096752_7	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0096752_7	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0096752_8	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0096752_8	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0096752_8	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0096752_8	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0096752_8	Pfam	PF13401	AAA domain	AAA_22
UHGV-0096752_8	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0096752_8	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0096752_10	PHROG	phrog_5671	NA	unknown function
UHGV-0096752_10	eggNOG-mapper	552398.HMPREF0866_03130	NA	NA
UHGV-0096752_12	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0096752_12	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0096752_12	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0096752_12	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0096752_12	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0096752_12	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0096752_12	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0096752_13	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0096752_14	PHROG	phrog_286	NA	unknown function
UHGV-0096752_14	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0096752_14	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0096752_14	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0096752_14	Structural annotation	PF06252	NA	NA
UHGV-0096752_15	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0096752_15	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0096752_15	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0096752_15	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0096752_15	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0096752_15	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0096752_17	PHROG	phrog_25462	NA	unknown function
UHGV-0096752_17	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0096752_17	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0096752_17	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0096752_18	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0096752_18	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0096752_18	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0096752_18	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0096752_18	Structural annotation	PF11985	NA	NA
UHGV-0096752_19	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0096752_19	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0096752_19	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0096752_19	eggNOG-mapper	1304880.JAGB01000001_gene953	antitermination protein NusG	NA
UHGV-0096752_19	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0096752_19	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0096752_19	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0096752_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096752_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0096752_21	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0096752_21	eggNOG-mapper	1105031.HMPREF1141_0088	phage terminase, large subunit, PBSX family	NA
UHGV-0096752_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096752_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096752_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096752_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096752_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0096752_22	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0096752_22	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0096752_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096752_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0096752_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0096752_23	UniRef90	UniRef90_A0A373KZU7	Capsid protein	NA
UHGV-0096752_23	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0096752_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0096752_23	COG	COG2369	NA	NA
UHGV-0096752_23	Structural annotation	PF06152	NA	NA
UHGV-0096752_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0096752_25	UniRef90	UniRef90_UPI001897D024	phage scaffolding protein	NA
UHGV-0096752_25	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0096752_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0096752_25	Structural annotation	PF06810	NA	NA
UHGV-0096752_26	PHROG	phrog_212	major head protein	head and packaging
UHGV-0096752_26	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0096752_26	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0096752_26	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0096752_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0096752_27	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0096752_28	PHROG	phrog_3366	NA	unknown function
UHGV-0096752_28	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0096752_28	Pfam	PF20536	NA	DUF6751
UHGV-0096752_28	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0096752_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0096752_29	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0096752_29	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0096752_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0096752_29	Structural annotation	PF11114	NA	NA
UHGV-0096752_30	PHROG	phrog_3266	tail completion	connector
UHGV-0096752_30	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0096752_30	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0096752_30	Structural annotation	PF12691	NA	NA
UHGV-0096752_31	PHROG	phrog_3099	NA	unknown function
UHGV-0096752_31	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0096752_31	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0096752_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0096752_32	PHROG	phrog_4450	NA	unknown function
UHGV-0096752_32	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-0096752_32	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0096752_32	Pfam	PF20378	NA	DUF6673
UHGV-0096752_32	Structural annotation	PF20378	NA	NA
UHGV-0096752_33	PHROG	phrog_706	NA	unknown function
UHGV-0096752_33	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0096752_33	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0096752_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0096752_33	Structural annotation	PF06854	NA	NA
UHGV-0096752_34	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0096752_35	PHROG	phrog_19074	NA	unknown function
UHGV-0096752_35	UniRef90	UniRef90_A0A413QHE6	Phage tail tape measure protein	NA
UHGV-0096752_35	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0096752_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0096752_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0096752_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0096752_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0096752_36	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0096752_36	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0096752_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096752_36	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0096752_37	PHROG	phrog_18110	NA	unknown function
UHGV-0096752_37	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0096752_37	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0096752_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0096752_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0096752_37	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0096752_37	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0096752_39	PHROG	phrog_11105	NA	unknown function
UHGV-0096752_40	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0096752_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0096752_40	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0096752_42	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-0096752_42	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0096752_43	PHROG	phrog_21357	endolysin	lysis
UHGV-0096752_43	UniRef90	UniRef90_A0A373L0D7	CHAP domain-containing protein	NA
UHGV-0096752_43	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0096752_43	Pfam	PF05257	CHAP domain	CHAP
UHGV-0096752_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0096752_43	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0096752_43	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0096752_44	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0096752_44	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0096752_44	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0096752_44	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0096752_44	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0096752_44	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0096752_44	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0096752_44	COG	COG0338	DNA-adenine methylase	NA
UHGV-0096752_44	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0096752_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0096752_45	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0096752_45	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0096752_45	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0096752_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096752_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0096752_45	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0096752_46	UniRef90	UniRef90_R5DU92	HisKA_7TM domain-containing protein	NA
UHGV-0096752_46	eggNOG-mapper	411461.DORFOR_00052	NA	NA
UHGV-0096752_46	Pfam	PF16927	N-terminal 7TM region of histidine kinase	HisKA_7TM