UHGV-0096768

Genome information

Genome length 28,629 bps

CDS count 46

Completeness 75.24% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096768
vOTU ID	vOTU-031290
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227220
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.7
Jumbo phage	No

Genome content
Genome length	28,629 bps
GC content	51.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.55%
Average CDS length	600.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096768_2	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0096768_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0096768_3	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0096768_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0096768_5	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0096768_5	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0096768_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0096768_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0096768_5	COG	COG4926	Phage-related protein	NA
UHGV-0096768_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0096768_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0096768_6	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0096768_6	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0096768_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096768_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0096768_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0096768_7	eggNOG-mapper	1089553.Tph_c23060	lysine exporter protein (LysE YggA)	NA
UHGV-0096768_7	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0096768_8	Structural annotation	PF11836	NA	NA
UHGV-0096768_9	PHROG	phrog_88	major tail protein	tail
UHGV-0096768_9	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0096768_9	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0096768_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0096768_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0096768_10	PHROG	phrog_78	tail terminator	connector
UHGV-0096768_10	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0096768_10	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0096768_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096768_11	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0096768_11	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0096768_11	Structural annotation	TIGR01725	NA	NA
UHGV-0096768_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0096768_12	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0096768_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096768_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0096768_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096768_13	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0096768_13	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0096768_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096768_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096768_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096768_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096768_14	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0096768_14	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0096768_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096768_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096768_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096768_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096768_15	PHROG	phrog_16951	NA	unknown function
UHGV-0096768_15	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0096768_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096768_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096768_16	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0096768_16	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0096768_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096768_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096768_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096768_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096768_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096768_17	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0096768_17	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0096768_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096768_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096768_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096768_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0096768_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0096768_18	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0096768_18	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0096768_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096768_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0096768_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0096768_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096768_19	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0096768_19	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096768_19	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0096768_19	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0096768_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096768_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096768_19	Structural annotation	PF05766	NA	NA
UHGV-0096768_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0096768_21	PHROG	phrog_12862	NA	unknown function
UHGV-0096768_21	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0096768_21	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0096768_21	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0096768_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0096768_21	COG	COG0863	DNA modification methylase	NA
UHGV-0096768_21	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0096768_22	PHROG	phrog_11237	NA	unknown function
UHGV-0096768_22	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0096768_22	Structural annotation	TIGR01636	NA	NA
UHGV-0096768_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096768_25	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0096768_25	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0096768_26	PHROG	phrog_24518	NA	unknown function
UHGV-0096768_26	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0096768_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096768_31	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096768_31	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-0096768_31	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-0096768_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096768_31	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0096768_31	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0096768_31	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0096768_32	PHROG	phrog_824	NA	unknown function
UHGV-0096768_32	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0096768_32	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0096768_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0096768_32	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0096768_36	PHROG	phrog_22040	NA	unknown function
UHGV-0096768_36	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0096768_37	PHROG	phrog_924	NA	unknown function
UHGV-0096768_37	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-0096768_37	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0096768_37	Pfam	PF04448	NA	DUF551
UHGV-0096768_37	Structural annotation	PF19905	NA	NA
UHGV-0096768_39	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0096768_39	PHROG	phrog_18750	NA	unknown function
UHGV-0096768_39	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0096768_39	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0096768_39	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0096768_39	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0096768_39	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0096768_41	PHROG	phrog_6058	NA	unknown function
UHGV-0096768_41	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0096768_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0096768_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096768_42	UniRef90	UniRef90_A0A3D5TL86	Transcriptional regulator	NA
UHGV-0096768_42	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0096768_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096768_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096768_42	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0096768_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0096768_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096768_43	UniRef90	UniRef90_A0A3D5TL51	XRE family transcriptional regulator	NA
UHGV-0096768_43	eggNOG-mapper	445972.ANACOL_01759	sequence-specific DNA binding	NA
UHGV-0096768_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096768_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096768_43	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096768_44	PHROG	phrog_87	metallo-protease	other
UHGV-0096768_44	UniRef90	UniRef90_R6EG79	Peptidase_M78 domain-containing protein	NA
UHGV-0096768_44	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0096768_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0096768_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0096768_46	KOfam	K14059	int; integrase	NA
UHGV-0096768_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0096768_46	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0096768_46	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0096768_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096768_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0096768_46	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA