UHGV-0096793

Genome information

Genome length 40,065 bps

CDS count 70

Completeness 99.90% (high-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096793
vOTU ID	vOTU-013895
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_214246
BioSample	SAMEA3541596
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.3
Jumbo phage	No

Genome content
Genome length	40,065 bps
GC content	45.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	91.91%
Average CDS length	531.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096793_1	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0096793_1	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096793_1	UniRef90	UniRef90_A0A0D8IU99	NA	NA
UHGV-0096793_1	eggNOG-mapper	665956.HMPREF1032_02542	phosphoadenosine phosphosulfate	NA
UHGV-0096793_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0096793_1	Pfam	PF11922	NA	DUF3440
UHGV-0096793_1	COG	COG3969	NA	NA
UHGV-0096793_1	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0096793_2	UniRef90	UniRef90_A0A354WNT5	EF-hand domain-containing protein	NA
UHGV-0096793_2	eggNOG-mapper	665956.HMPREF1032_02543	NA	NA
UHGV-0096793_4	UniRef90	UniRef90_G9RQM5	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0096793_4	eggNOG-mapper	665956.HMPREF1032_02544	Transposase	NA
UHGV-0096793_4	COG	COG4372	NA	NA
UHGV-0096793_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0096793_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0096793_5	UniRef90	UniRef90_A0A3A6E4S5	Recombinase family protein	NA
UHGV-0096793_5	eggNOG-mapper	1291050.JAGE01000001_gene2185	NA	NA
UHGV-0096793_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0096793_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-0096793_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0096793_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0096793_5	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0096793_6	eggNOG-mapper	1286171.EAL2_c05530	NA	NA
UHGV-0096793_6	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0096793_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096793_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096793_8	UniRef90	UniRef90_A0A357CY43	HTH cro/C1-type domain-containing protein	NA
UHGV-0096793_8	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0096793_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096793_8	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0096793_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096793_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096793_9	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0096793_9	eggNOG-mapper	1519439.JPJG01000066_gene2398	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096793_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096793_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096793_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0096793_11	AcrCatalog	cluster_35670	NA	NA
UHGV-0096793_11	Structural annotation	NF042413	NA	NA
UHGV-0096793_12	PHROG	phrog_30822	NA	unknown function
UHGV-0096793_12	UniRef90	UniRef90_UPI00164AA766	helix-turn-helix domain-containing protein	NA
UHGV-0096793_12	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0096793_12	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-0096793_13	PHROG	phrog_1123	NA	unknown function
UHGV-0096793_13	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0096793_15	PHROG	phrog_14970	NA	unknown function
UHGV-0096793_15	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0096793_15	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0096793_15	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0096793_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0096793_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0096793_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0096793_16	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0096793_17	PHROG	phrog_7566	NA	unknown function
UHGV-0096793_17	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0096793_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096793_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096793_18	UniRef90	UniRef90_A0A0W7TNC8	Single-stranded DNA-binding protein	NA
UHGV-0096793_18	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0096793_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096793_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096793_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096793_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096793_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0096793_19	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0096793_19	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0096793_19	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0096793_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0096793_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096793_19	Structural annotation	PF14297	NA	NA
UHGV-0096793_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0096793_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0096793_20	UniRef90	UniRef90_A0A3A6E5J4	DNA helicase	NA
UHGV-0096793_20	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0096793_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0096793_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0096793_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0096793_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0096793_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0096793_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096793_21	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0096793_21	eggNOG-mapper	697284.ERIC2_c10620	Endodeoxyribonuclease RusA	NA
UHGV-0096793_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0096793_21	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0096793_25	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0096793_25	UniRef90	UniRef90_UPI0009E43F9B	Lar family restriction alleviation protein	NA
UHGV-0096793_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0096793_25	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0096793_25	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0096793_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0096793_27	PHROG	phrog_38832	NA	unknown function
UHGV-0096793_27	Structural annotation	PF11132	NA	NA
UHGV-0096793_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0096793_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0096793_31	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0096793_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0096793_34	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0096793_35	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0096793_35	eggNOG-mapper	1232443.BAIA02000078_gene38	NA	NA
UHGV-0096793_35	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0096793_35	Structural annotation	PF13542	NA	NA
UHGV-0096793_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096793_36	PHROG	phrog_10250	NA	unknown function
UHGV-0096793_36	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0096793_36	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0096793_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096793_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096793_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096793_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096793_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0096793_37	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0096793_37	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0096793_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096793_38	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0096793_38	UniRef90	UniRef90_A0A3D3Y165	Phage_Mu_F domain-containing protein	NA
UHGV-0096793_38	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0096793_38	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0096793_38	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0096793_38	COG	COG2369	NA	NA
UHGV-0096793_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0096793_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096793_39	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0096793_39	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0096793_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096793_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096793_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0096793_45	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0096793_45	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0096793_45	Structural annotation	PF10723	NA	NA
UHGV-0096793_46	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0096793_47	PHROG	phrog_212	major head protein	head and packaging
UHGV-0096793_47	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-0096793_47	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0096793_47	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0096793_48	PHROG	phrog_1236	head protein	head and packaging
UHGV-0096793_49	PHROG	phrog_17977	NA	unknown function
UHGV-0096793_49	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0096793_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0096793_50	PHROG	phrog_17405	head protein	head and packaging
UHGV-0096793_50	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0096793_50	Structural annotation	PF11367	NA	NA
UHGV-0096793_51	PHROG	phrog_885	major tail protein	tail
UHGV-0096793_51	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0096793_51	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0096793_51	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0096793_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0096793_54	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0096793_54	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0096793_54	COG	COG1511	NA	NA
UHGV-0096793_54	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0096793_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0096793_55	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0096793_55	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0096793_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096793_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0096793_56	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0096793_56	UniRef90	UniRef90_A0A0D8IVK1	Prophage_tail domain-containing protein	NA
UHGV-0096793_56	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0096793_56	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0096793_56	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0096793_56	COG	COG4926	Phage-related protein	NA
UHGV-0096793_56	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0096793_57	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0096793_57	UniRef90	UniRef90_UPI001967E4F4	BppU family phage baseplate upper protein	NA
UHGV-0096793_57	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0096793_57	Structural annotation	PF10651, PF04721, NF038186	NA	NA
UHGV-0096793_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0096793_58	PHROG	phrog_3088	amidase	lysis
UHGV-0096793_58	UniRef90	UniRef90_UPI0019676D30	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096793_58	eggNOG-mapper	883081.HMPREF9698_01099	Ami_2	NA
UHGV-0096793_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0096793_58	Pfam	PF05036	SPOR domain	SPOR
UHGV-0096793_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0096793_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0096793_59	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0096793_60	PHROG	phrog_1129	holin	lysis
UHGV-0096793_60	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0096793_60	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0096793_60	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0096793_60	Structural annotation	PF16079	NA	NA
UHGV-0096793_61	PHROG	phrog_12732	NA	unknown function
UHGV-0096793_63	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0096793_63	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0096793_63	UniRef90	UniRef90_UPI0009E291B2	helix-turn-helix transcriptional regulator	NA
UHGV-0096793_63	eggNOG-mapper	760568.Desku_1400	sequence-specific DNA binding	NA
UHGV-0096793_63	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096793_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096793_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096793_63	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0096793_64	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0096793_64	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0096793_64	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0096793_64	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0096793_67	PHROG	phrog_16490	NA	unknown function
UHGV-0096793_67	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0096793_68	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0096793_69	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0096793_70	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA