UHGV-0096853

Genome information

Genome length 28,969 bps

CDS count 45

Completeness 81.43% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096853
vOTU ID	vOTU-036423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216944
BioSample	SAMEA3541561
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.95
Jumbo phage	No

Genome content
Genome length	28,969 bps
GC content	41.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.71%
Average CDS length	588.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096853_1	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0096853_2	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0096853_2	PHROG	phrog_14030	NA	unknown function
UHGV-0096853_2	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-0096853_2	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0096853_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0096853_2	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0096853_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0096853_2	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0096853_3	PHROG	phrog_13289	tail protein	tail
UHGV-0096853_3	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-0096853_3	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0096853_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0096853_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0096853_3	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0096853_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0096853_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0096853_4	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-0096853_4	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0096853_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096853_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0096853_5	KOfam	K22051	mscM, bspA; miniconductance mechanosensitive channel	NA
UHGV-0096853_5	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0096853_5	UniRef90	UniRef90_A0A374E9U4	Phage tail tape measure protein	NA
UHGV-0096853_5	eggNOG-mapper	397288.C806_00771	Phage-related minor tail protein	NA
UHGV-0096853_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0096853_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0096853_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0096853_7	PHROG	phrog_88	major tail protein	tail
UHGV-0096853_7	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-0096853_7	eggNOG-mapper	1196031.ALEG01000039_gene1822	phage major tail protein, phi13 family	NA
UHGV-0096853_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0096853_7	COG	COG5492	NA	NA
UHGV-0096853_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0096853_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096853_8	UniRef90	UniRef90_R7FK52	Phage protein HK97 gp10 family	NA
UHGV-0096853_8	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0096853_9	Structural annotation	PF05657	NA	NA
UHGV-0096853_10	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0096853_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096853_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096853_12	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0096853_12	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0096853_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096853_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096853_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096853_12	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0096853_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0096853_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0096853_13	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0096853_13	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0096853_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0096853_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0096853_13	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0096853_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096853_14	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0096853_14	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0096853_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096853_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096853_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096853_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096853_15	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0096853_15	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0096853_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096853_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096853_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096853_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0096853_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0096853_16	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0096853_16	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0096853_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096853_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096853_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0096853_18	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0096853_18	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0096853_18	Pfam	PF07374	NA	DUF1492
UHGV-0096853_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0096853_18	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0096853_21	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0096853_21	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0096853_21	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0096853_21	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0096853_21	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0096853_21	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0096853_21	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0096853_24	Structural annotation	PF10627	NA	NA
UHGV-0096853_26	PHROG	phrog_7566	NA	unknown function
UHGV-0096853_26	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0096853_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096853_28	PHROG	phrog_15982	NA	unknown function
UHGV-0096853_28	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-0096853_28	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0096853_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096853_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096853_28	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0096853_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0096853_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096853_30	UniRef90	UniRef90_UPI00156DD98C	ParA family protein	NA
UHGV-0096853_30	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0096853_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-0096853_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0096853_30	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0096853_31	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0096853_32	PHROG	phrog_824	NA	unknown function
UHGV-0096853_32	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-0096853_32	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0096853_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0096853_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096853_34	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0096853_34	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0096853_40	Structural annotation	PF11195	NA	NA
UHGV-0096853_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0096853_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096853_41	UniRef90	UniRef90_UPI001D120794	helix-turn-helix domain-containing protein	NA
UHGV-0096853_41	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0096853_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0096853_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096853_41	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0096853_42	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0096853_42	UniRef90	UniRef90_A0A173RY24	HTH-type transcriptional regulator sinR	NA
UHGV-0096853_42	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0096853_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096853_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096853_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0096853_43	PHROG	phrog_38135	NA	unknown function
UHGV-0096853_43	UniRef90	UniRef90_UPI001F3985DB	NA	NA
UHGV-0096853_43	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0096853_43	Pfam	PF14020	NA	DUF4236
UHGV-0096853_43	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0096853_43	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0096853_45	KOfam	K14059	int; integrase	NA
UHGV-0096853_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0096853_45	UniRef90	UniRef90_A0A173RBY2	Site-specific tyrosine recombinase XerD	NA
UHGV-0096853_45	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0096853_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096853_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096853_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA