UHGV-0096973

Genome information

Genome length 33,940 bps

CDS count 44

Completeness 90.46% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096973
vOTU ID	vOTU-067909
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216272
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.49
Jumbo phage	No

Genome content
Genome length	33,940 bps
GC content	45.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.09%
Average CDS length	737.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096973_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0096973_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0096973_1	UniRef90	UniRef90_A0A3D4JJV8	Recombinase family protein	NA
UHGV-0096973_1	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0096973_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0096973_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0096973_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0096973_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0096973_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0096973_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0096973_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096973_3	UniRef90	UniRef90_A0A373VMR3	Repressor LexA	NA
UHGV-0096973_3	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0096973_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0096973_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096973_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0096973_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0096973_4	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0096973_4	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0096973_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0096973_6	PHROG	phrog_9576	NA	unknown function
UHGV-0096973_6	UniRef90	UniRef90_J9GVA4	NA	NA
UHGV-0096973_6	eggNOG-mapper	1074451.CRL705_1686	NA	NA
UHGV-0096973_9	Structural annotation	PF01775, MF_00273, NF010188	NA	NA
UHGV-0096973_13	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0096973_13	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0096973_13	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0096973_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096973_13	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0096973_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0096973_16	PHROG	phrog_1499	NA	unknown function
UHGV-0096973_16	UniRef90	UniRef90_A0A1C6E8X2	Chromosome segregation protein	NA
UHGV-0096973_16	eggNOG-mapper	641112.ACOK01000073_gene2873	domain protein	NA
UHGV-0096973_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0096973_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0096973_16	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0096973_17	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096973_17	UniRef90	UniRef90_UPI000F52E538	ATP-binding protein	NA
UHGV-0096973_17	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0096973_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-0096973_17	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0096973_18	PHROG	phrog_2698	NA	unknown function
UHGV-0096973_18	UniRef90	UniRef90_UPI001D0882DA	NA	NA
UHGV-0096973_18	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0096973_18	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0096973_19	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0096973_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0096973_19	UniRef90	UniRef90_A0A1C6E943	Type-1 restriction enzyme R protein	NA
UHGV-0096973_19	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0096973_19	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0096973_19	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0096973_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0096973_19	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0096973_19	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0096973_20	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0096973_20	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0096973_20	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-0096973_20	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0096973_20	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0096973_20	Pfam	PF13481	AAA domain	AAA_25
UHGV-0096973_20	COG	COG3598	RecA-family ATPase	NA
UHGV-0096973_20	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0096973_21	PHROG	phrog_16687	NA	unknown function
UHGV-0096973_21	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0096973_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096973_22	UniRef90	UniRef90_A0A373Y8T3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0096973_22	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0096973_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0096973_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0096973_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0096973_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096973_24	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0096973_24	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0096973_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0096973_24	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0096973_25	UniRef90	UniRef90_A0A5R9MHA3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0096973_25	Structural annotation	PF07374	NA	NA
UHGV-0096973_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096973_26	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0096973_26	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-0096973_26	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0096973_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0096973_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0096973_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096973_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096973_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0096973_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0096973_27	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-0096973_27	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0096973_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0096973_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0096973_28	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0096973_28	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0096973_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0096973_28	COG	COG2369	NA	NA
UHGV-0096973_28	Structural annotation	PF06152	NA	NA
UHGV-0096973_29	Structural annotation	PF12305	NA	NA
UHGV-0096973_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0096973_30	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-0096973_30	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0096973_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0096973_30	Structural annotation	PF06810	NA	NA
UHGV-0096973_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0096973_31	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-0096973_31	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0096973_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0096973_31	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0096973_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0096973_32	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0096973_32	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0096973_33	PHROG	phrog_3366	NA	unknown function
UHGV-0096973_33	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0096973_33	Pfam	PF20536	NA	DUF6751
UHGV-0096973_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0096973_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0096973_34	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-0096973_34	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0096973_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0096973_34	Structural annotation	PF11114	NA	NA
UHGV-0096973_35	PHROG	phrog_3266	tail completion	connector
UHGV-0096973_35	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0096973_35	Structural annotation	PF20765	NA	NA
UHGV-0096973_36	PHROG	phrog_3099	NA	unknown function
UHGV-0096973_36	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0096973_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0096973_37	PHROG	phrog_11299	NA	unknown function
UHGV-0096973_37	Structural annotation	PF20378	NA	NA
UHGV-0096973_38	PHROG	phrog_706	NA	unknown function
UHGV-0096973_38	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0096973_38	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0096973_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0096973_38	Structural annotation	PF06854	NA	NA
UHGV-0096973_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096973_39	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0096973_39	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0096973_39	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0096973_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0096973_40	PHROG	phrog_1194	NA	unknown function
UHGV-0096973_40	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0096973_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0096973_41	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0096973_41	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0096973_41	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0096973_43	PHROG	phrog_19280	NA	unknown function
UHGV-0096973_43	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0096973_43	Structural annotation	PF20942	NA	NA