UHGV-0097003

Genome information

Genome length 35,036 bps

CDS count 62

Completeness 84.06% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097003
vOTU ID	vOTU-021672
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_208994
BioSample	SAMEA3449245
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.81
Jumbo phage	No

Genome content
Genome length	35,036 bps
GC content	54.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.72%
Average CDS length	527.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097003_1	PHROG	phrog_38044	NA	unknown function
UHGV-0097003_1	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0097003_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0097003_3	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0097003_3	Structural annotation	PF07238	NA	NA
UHGV-0097003_4	UniRef90	UniRef90_A0A810QCC8	Peptidase S74 domain-containing protein	NA
UHGV-0097003_4	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0097003_4	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0097003_5	PHROG	phrog_6616	tail protein	tail
UHGV-0097003_5	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0097003_5	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0097003_6	PHROG	phrog_1194	NA	unknown function
UHGV-0097003_6	eggNOG-mapper	1235797.C816_04181	NA	NA
UHGV-0097003_6	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0097003_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0097003_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0097003_7	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0097003_7	COG	COG1511	NA	NA
UHGV-0097003_7	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0097003_9	PHROG	phrog_706	NA	unknown function
UHGV-0097003_9	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0097003_9	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0097003_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0097003_9	Structural annotation	PF06854	NA	NA
UHGV-0097003_10	PHROG	phrog_11299	NA	unknown function
UHGV-0097003_10	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0097003_10	Structural annotation	PF10666	NA	NA
UHGV-0097003_11	PHROG	phrog_3099	NA	unknown function
UHGV-0097003_11	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0097003_11	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0097003_12	PHROG	phrog_3266	tail completion	connector
UHGV-0097003_12	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0097003_12	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0097003_12	Structural annotation	PF12691	NA	NA
UHGV-0097003_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0097003_13	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0097003_13	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0097003_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0097003_13	Structural annotation	PF11114	NA	NA
UHGV-0097003_14	PHROG	phrog_3366	NA	unknown function
UHGV-0097003_14	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0097003_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0097003_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097003_15	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0097003_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0097003_16	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0097003_16	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0097003_16	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0097003_17	Structural annotation	PF06810	NA	NA
UHGV-0097003_18	Structural annotation	PF18152	NA	NA
UHGV-0097003_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097003_20	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0097003_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0097003_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097003_20	COG	COG2369	NA	NA
UHGV-0097003_20	Structural annotation	PF06152	NA	NA
UHGV-0097003_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097003_21	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0097003_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0097003_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097003_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097003_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097003_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097003_22	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0097003_22	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0097003_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0097003_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097003_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097003_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097003_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0097003_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0097003_24	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0097003_24	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0097003_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0097003_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0097003_24	COG	COG0863	DNA modification methylase	NA
UHGV-0097003_24	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0097003_25	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0097003_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097003_25	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0097003_25	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0097003_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097003_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097003_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0097003_26	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0097003_29	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0097003_30	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0097003_30	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0097003_30	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0097003_32	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0097003_32	UniRef90	UniRef90_A0A1L5KS67	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0097003_32	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0097003_32	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0097003_32	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0097003_32	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0097003_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097003_33	PHROG	phrog_29443	NA	unknown function
UHGV-0097003_33	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097003_33	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0097003_33	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0097003_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097003_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097003_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0097003_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0097003_35	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0097003_35	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0097003_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0097003_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0097003_35	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0097003_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097003_36	PHROG	phrog_29443	NA	unknown function
UHGV-0097003_36	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097003_36	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0097003_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0097003_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097003_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097003_38	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0097003_38	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0097003_38	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0097003_38	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0097003_38	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0097003_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0097003_38	COG	COG0863	DNA modification methylase	NA
UHGV-0097003_38	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0097003_40	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097003_40	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0097003_40	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0097003_40	Pfam	PF06356	NA	DUF1064
UHGV-0097003_40	Structural annotation	PF06356	NA	NA
UHGV-0097003_42	Structural annotation	PF11417	NA	NA
UHGV-0097003_43	PHROG	phrog_15768	NA	unknown function
UHGV-0097003_43	UniRef90	UniRef90_UPI0019563B2C	NA	NA
UHGV-0097003_43	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0097003_43	Pfam	PF19808	NA	DUF6291
UHGV-0097003_43	Structural annotation	PF19808	NA	NA
UHGV-0097003_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0097003_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097003_46	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-0097003_46	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0097003_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0097003_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0097003_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097003_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0097003_46	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0097003_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097003_47	UniRef90	UniRef90_UPI001C8E5FBF	ERF family protein	NA
UHGV-0097003_47	eggNOG-mapper	1536774.H70357_24790	ERF superfamily	NA
UHGV-0097003_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-0097003_48	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097003_48	UniRef90	UniRef90_A0A1V4XP24	PD-(D/E)XK nuclease superfamily protein	NA
UHGV-0097003_48	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0097003_48	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0097003_50	PHROG	phrog_4433	NA	unknown function
UHGV-0097003_50	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0097003_50	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0097003_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0097003_50	Structural annotation	NF007410	NA	NA
UHGV-0097003_52	PHROG	phrog_22529	NA	unknown function
UHGV-0097003_52	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0097003_52	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0097003_52	Pfam	PF06725	3D domain	3D
UHGV-0097003_52	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0097003_52	Structural annotation	COG3584	NA	NA
UHGV-0097003_55	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0097003_55	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-0097003_55	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0097003_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0097003_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0097003_56	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0097003_56	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0097003_57	Structural annotation	PF03885	NA	NA
UHGV-0097003_61	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0097003_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097003_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0097003_61	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0097003_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0097003_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0097003_62	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0097003_62	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0097003_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0097003_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0097003_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0097003_62	Structural annotation	PF00239, NF041201, COG1961	NA	NA