UHGV-0097106

Genome information

vOTU vOTU-020190

Genome length 34,174 bps

CDS count 51

Completeness 81.34% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097106
vOTU ID	vOTU-020190
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_214322
BioSample	SAMEA3541569
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.88
Jumbo phage	No

Genome content
Genome length	34,174 bps
GC content	42.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.59%
Average CDS length	603.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097106_2	PHROG	phrog_6616	tail protein	tail
UHGV-0097106_2	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0097106_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0097106_2	COG	COG4926	Phage-related protein	NA
UHGV-0097106_3	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0097106_3	Structural annotation	PF07761	NA	NA
UHGV-0097106_4	PHROG	phrog_1194	NA	unknown function
UHGV-0097106_4	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0097106_4	Pfam	PF20458	NA	DUF6711
UHGV-0097106_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0097106_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0097106_5	eggNOG-mapper	469596.HMPREF9488_01316	NA	NA
UHGV-0097106_6	PHROG	phrog_706	NA	unknown function
UHGV-0097106_6	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0097106_6	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0097106_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0097106_6	Structural annotation	PF06854	NA	NA
UHGV-0097106_7	PHROG	phrog_11299	NA	unknown function
UHGV-0097106_7	Structural annotation	PF10666	NA	NA
UHGV-0097106_8	PHROG	phrog_3099	NA	unknown function
UHGV-0097106_8	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0097106_8	Structural annotation	PF08813, TIGR02126, COG3498	NA	NA
UHGV-0097106_9	PHROG	phrog_3266	tail completion	connector
UHGV-0097106_9	eggNOG-mapper	1151292.QEW_4531	NA	NA
UHGV-0097106_9	Structural annotation	PF12691	NA	NA
UHGV-0097106_10	PHROG	phrog_3366	NA	unknown function
UHGV-0097106_10	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0097106_10	Pfam	PF20536	NA	DUF6751
UHGV-0097106_10	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0097106_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097106_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0097106_12	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0097106_12	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0097106_12	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0097106_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0097106_13	UniRef90	UniRef90_A0A174GWW4	Phage minor structural protein GP20	NA
UHGV-0097106_13	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0097106_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0097106_13	Structural annotation	PF06810	NA	NA
UHGV-0097106_16	PHROG	phrog_3675	NA	unknown function
UHGV-0097106_16	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0097106_16	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0097106_16	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0097106_16	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0097106_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097106_18	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0097106_18	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0097106_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097106_18	COG	COG2369	NA	NA
UHGV-0097106_18	Structural annotation	PF06152, PF15542, TIGR01641	NA	NA
UHGV-0097106_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097106_19	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0097106_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0097106_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097106_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097106_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097106_20	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0097106_20	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0097106_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0097106_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097106_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097106_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097106_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0097106_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0097106_21	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0097106_21	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0097106_21	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0097106_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0097106_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0097106_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0097106_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097106_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0097106_26	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097106_26	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0097106_26	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0097106_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097106_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097106_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0097106_27	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-0097106_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0097106_27	UniRef90	UniRef90_A0A3A9F7M0	PAPS_reduct domain-containing protein	NA
UHGV-0097106_27	eggNOG-mapper	1235799.C818_02649	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0097106_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0097106_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0097106_27	Structural annotation	PF01507, MF_00063, NF002537	NA	NA
UHGV-0097106_28	PHROG	phrog_8684	NA	unknown function
UHGV-0097106_28	UniRef90	UniRef90_UPI00156EBF78	YopX family protein	NA
UHGV-0097106_28	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0097106_28	Pfam	PF09643	YopX protein	YopX
UHGV-0097106_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0097106_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0097106_30	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-0097106_32	PHROG	phrog_874	NA	unknown function
UHGV-0097106_32	UniRef90	UniRef90_UPI000CDA362A	ASCH domain-containing protein	NA
UHGV-0097106_32	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0097106_32	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0097106_34	PHROG	phrog_20593	NA	unknown function
UHGV-0097106_36	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097106_36	eggNOG-mapper	1304866.K413DRAFT_1199	NA	NA
UHGV-0097106_37	PHROG	phrog_16304	NA	unknown function
UHGV-0097106_37	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0097106_37	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0097106_37	Pfam	PF19808	NA	DUF6291
UHGV-0097106_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097106_37	Structural annotation	PF19808	NA	NA
UHGV-0097106_38	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0097106_39	PHROG	phrog_7566	NA	unknown function
UHGV-0097106_39	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0097106_39	eggNOG-mapper	272562.CA_C1033	HNH nucleases	NA
UHGV-0097106_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0097106_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0097106_40	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0097106_40	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0097106_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0097106_41	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097106_41	UniRef90	UniRef90_A0A352BM23	NA	NA
UHGV-0097106_41	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0097106_41	Pfam	PF06378	NA	DUF1071
UHGV-0097106_41	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0097106_46	PHROG	phrog_3292	NA	unknown function
UHGV-0097106_46	UniRef90	UniRef90_UPI0012F79817	KTSC domain-containing protein	NA
UHGV-0097106_46	eggNOG-mapper	1408823.AXUS01000024_gene2707	KTSC domain	NA
UHGV-0097106_46	Pfam	PF13619	KTSC domain	KTSC
UHGV-0097106_46	COG	COG4249	NA	NA
UHGV-0097106_46	Structural annotation	PF13619	NA	NA
UHGV-0097106_48	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0097106_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0097106_48	UniRef90	UniRef90_UPI001D09BE37	helix-turn-helix domain-containing protein	NA
UHGV-0097106_48	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0097106_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097106_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097106_49	UniRef90	UniRef90_A0A3D5L8I7	DNA-binding protein	NA
UHGV-0097106_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0097106_50	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0097106_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097106_50	UniRef90	UniRef90_A0A3D5LA47	XRE family transcriptional regulator	NA
UHGV-0097106_50	eggNOG-mapper	742735.HMPREF9467_01804	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0097106_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0097106_50	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0097106_51	PHROG	phrog_87	metallo-protease	other
UHGV-0097106_51	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0097106_51	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0097106_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0097106_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0097106_51	Structural annotation	PF06114, COG2856	NA	NA