UHGV-0097131

Genome information

vOTU vOTU-032084

Genome length 36,103 bps

CDS count 58

Completeness 80.25% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097131
vOTU ID	vOTU-032084
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_224570
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.79
Jumbo phage	No

Genome content
Genome length	36,103 bps
GC content	41.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.53%
Average CDS length	587.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097131_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0097131_1	PHROG	phrog_7	endolysin	lysis
UHGV-0097131_1	UniRef90	UniRef90_C7GBY9	Lysozyme	NA
UHGV-0097131_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0097131_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0097131_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0097131_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0097131_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0097131_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0097131_2	PHROG	phrog_199	holin	lysis
UHGV-0097131_2	UniRef90	UniRef90_A0A414REB4	Holin	NA
UHGV-0097131_2	eggNOG-mapper	1235799.C818_04239	Bacteriophage holin family	NA
UHGV-0097131_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097131_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097131_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097131_3	PHROG	phrog_17196	kinase	other
UHGV-0097131_3	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0097131_3	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0097131_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0097131_5	PHROG	phrog_18190	NA	unknown function
UHGV-0097131_5	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-0097131_5	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0097131_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0097131_5	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0097131_6	PHROG	phrog_1194	NA	unknown function
UHGV-0097131_6	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0097131_6	Pfam	PF20458	NA	DUF6711
UHGV-0097131_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0097131_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0097131_7	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0097131_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0097131_8	PHROG	phrog_706	NA	unknown function
UHGV-0097131_8	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0097131_8	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0097131_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0097131_8	Structural annotation	PF06854	NA	NA
UHGV-0097131_9	PHROG	phrog_11299	NA	unknown function
UHGV-0097131_9	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0097131_9	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0097131_9	Pfam	PF20378	NA	DUF6673
UHGV-0097131_10	PHROG	phrog_3099	NA	unknown function
UHGV-0097131_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0097131_11	PHROG	phrog_3266	tail completion	connector
UHGV-0097131_11	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0097131_11	Structural annotation	PF12691	NA	NA
UHGV-0097131_12	PHROG	phrog_3366	NA	unknown function
UHGV-0097131_12	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0097131_12	Pfam	PF20536	NA	DUF6751
UHGV-0097131_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0097131_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0097131_13	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0097131_13	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0097131_13	Structural annotation	PF14359	NA	NA
UHGV-0097131_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097131_14	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0097131_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0097131_15	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0097131_15	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0097131_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0097131_16	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0097131_16	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0097131_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0097131_17	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0097131_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097131_18	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0097131_18	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0097131_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097131_18	COG	COG2369	NA	NA
UHGV-0097131_18	Structural annotation	PF06152	NA	NA
UHGV-0097131_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0097131_19	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0097131_19	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0097131_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0097131_19	Structural annotation	PF11114	NA	NA
UHGV-0097131_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097131_21	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0097131_21	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0097131_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097131_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097131_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097131_22	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0097131_22	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0097131_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0097131_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097131_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097131_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097131_23	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0097131_23	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0097131_23	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0097131_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0097131_23	COG	COG5484	NA	NA
UHGV-0097131_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0097131_24	PHROG	phrog_9479	NA	unknown function
UHGV-0097131_24	Structural annotation	PF15529	NA	NA
UHGV-0097131_26	PHROG	phrog_8680	NA	unknown function
UHGV-0097131_26	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0097131_26	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0097131_26	Pfam	PF14386	NA	DUF4417
UHGV-0097131_26	Structural annotation	PF14386	NA	NA
UHGV-0097131_27	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-0097131_30	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0097131_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097131_31	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0097131_31	UniRef90	UniRef90_A0A8D9UIK6	Cytosine specific methyltransferase	NA
UHGV-0097131_31	eggNOG-mapper	1123309.AQYB01000006_gene1892	C-5 cytosine-specific DNA methylase	NA
UHGV-0097131_31	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0097131_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097131_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097131_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097131_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0097131_32	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097131_32	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0097131_32	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0097131_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097131_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097131_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097131_32	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0097131_35	PHROG	phrog_20593	NA	unknown function
UHGV-0097131_36	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0097131_38	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA
UHGV-0097131_39	PHROG	phrog_8684	NA	unknown function
UHGV-0097131_39	UniRef90	UniRef90_A0A417PEY2	YopX domain-containing protein	NA
UHGV-0097131_39	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0097131_39	Pfam	PF09643	YopX protein	YopX
UHGV-0097131_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0097131_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0097131_40	PHROG	phrog_22292	NA	unknown function
UHGV-0097131_42	PHROG	phrog_37044	NA	unknown function
UHGV-0097131_42	eggNOG-mapper	397290.C810_00402	NA	NA
UHGV-0097131_43	PHROG	phrog_16304	NA	unknown function
UHGV-0097131_43	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-0097131_43	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0097131_43	Pfam	PF19808	NA	DUF6291
UHGV-0097131_43	Structural annotation	PF19808	NA	NA
UHGV-0097131_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0097131_44	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097131_44	UniRef90	UniRef90_A0A415TWS7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097131_44	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0097131_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097131_44	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0097131_45	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0097131_45	UniRef90	UniRef90_A0A412KFD2	Phage regulatory protein	NA
UHGV-0097131_45	eggNOG-mapper	428127.EUBDOL_01529	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0097131_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0097131_45	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0097131_45	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0097131_45	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0097131_45	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0097131_46	PHROG	phrog_7566	NA	unknown function
UHGV-0097131_46	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0097131_46	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0097131_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0097131_47	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0097131_47	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0097131_47	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0097131_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097131_48	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0097131_48	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0097131_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0097131_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097131_48	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0097131_49	PHROG	phrog_4400	NA	unknown function
UHGV-0097131_49	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0097131_49	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0097131_49	Structural annotation	PF01743, MF_00957, TIGR01942, COG0617	NA	NA
UHGV-0097131_50	PHROG	phrog_674	NA	unknown function
UHGV-0097131_50	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0097131_50	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0097131_50	Pfam	PF07083	NA	DUF1351
UHGV-0097131_50	Structural annotation	PF07083	NA	NA
UHGV-0097131_51	Structural annotation	PF21596, TIGR03081	NA	NA
UHGV-0097131_53	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0097131_53	Structural annotation	COG3296	NA	NA
UHGV-0097131_54	UniRef90	UniRef90_A0A414RMU8	XRE family transcriptional regulator	NA
UHGV-0097131_54	Structural annotation	PF21291, MF_00535, NF041951, COG1513	NA	NA
UHGV-0097131_55	PHROG	phrog_4621	NA	unknown function
UHGV-0097131_55	eggNOG-mapper	1415774.U728_1710	NA	NA