UHGV-0097166

Genome information

Genome length 56,809 bps

CDS count 100

Completeness 100.00% (complete)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097166
vOTU ID	vOTU-045382
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_231518
BioSample	SAMEA3708552
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.46
Jumbo phage	No

Genome content
Genome length	56,809 bps
GC content	39.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	87.07%
Average CDS length	500.25 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097166_3	PHROG	phrog_21718	NA	unknown function
UHGV-0097166_3	eggNOG-mapper	397290.C810_01326	NA	NA
UHGV-0097166_4	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0097166_5	PHROG	phrog_16490	NA	unknown function
UHGV-0097166_5	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0097166_6	PHROG	phrog_20016	NA	unknown function
UHGV-0097166_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0097166_6	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0097166_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0097166_7	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0097166_8	PHROG	phrog_1233	NA	unknown function
UHGV-0097166_8	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0097166_13	eggNOG-mapper	397290.C810_01351	NA	NA
UHGV-0097166_13	Structural annotation	COG5302	NA	NA
UHGV-0097166_15	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0097166_16	UniRef90	UniRef90_A0A1C7I464	AP2/ERF domain-containing protein	NA
UHGV-0097166_16	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0097166_16	Structural annotation	PF00847, TIGR03826	NA	NA
UHGV-0097166_17	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0097166_17	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0097166_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0097166_18	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097166_18	UniRef90	UniRef90_UPI001D1201FC	HNH endonuclease	NA
UHGV-0097166_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097166_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0097166_18	Structural annotation	PF14279	NA	NA
UHGV-0097166_21	Structural annotation	PF20556	NA	NA
UHGV-0097166_23	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0097166_24	UniRef90	UniRef90_UPI001D08650D	Com family DNA-binding transcriptional regulator	NA
UHGV-0097166_24	Pfam	PF10122	NA	Mu-like_Com
UHGV-0097166_24	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0097166_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0097166_25	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0097166_25	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0097166_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0097166_25	COG	COG5410	NA	NA
UHGV-0097166_25	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0097166_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097166_26	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0097166_26	Structural annotation	PF02996	NA	NA
UHGV-0097166_27	PHROG	phrog_2470	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0097166_27	UniRef90	UniRef90_A0A414ZRJ4	NA	NA
UHGV-0097166_27	eggNOG-mapper	649747.HMPREF0083_06229	NA	NA
UHGV-0097166_27	Pfam	PF11750	NA	DUF3307
UHGV-0097166_27	Structural annotation	PF11750	NA	NA
UHGV-0097166_28	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0097166_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0097166_29	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0097166_29	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0097166_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097166_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0097166_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0097166_31	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0097166_31	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0097166_31	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0097166_31	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0097166_32	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0097166_33	PHROG	phrog_4105	NA	unknown function
UHGV-0097166_33	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0097166_34	PHROG	phrog_1129	holin	lysis
UHGV-0097166_34	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0097166_34	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0097166_34	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0097166_34	Structural annotation	PF06946	NA	NA
UHGV-0097166_35	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0097166_37	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0097166_37	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0097166_37	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0097166_38	Structural annotation	PF05657	NA	NA
UHGV-0097166_39	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0097166_39	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0097166_40	PHROG	phrog_36112	NA	unknown function
UHGV-0097166_40	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0097166_40	Structural annotation	PF16478	NA	NA
UHGV-0097166_42	KOfam	K07273	acm; lysozyme	NA
UHGV-0097166_42	PHROG	phrog_291	endolysin	lysis
UHGV-0097166_42	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-0097166_42	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0097166_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0097166_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0097166_42	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0097166_42	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0097166_43	PHROG	phrog_28918	NA	unknown function
UHGV-0097166_43	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0097166_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0097166_44	PHROG	phrog_1194	NA	unknown function
UHGV-0097166_44	Pfam	PF20458	NA	DUF6711
UHGV-0097166_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0097166_45	PHROG	phrog_18190	NA	unknown function
UHGV-0097166_45	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0097166_45	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0097166_48	PHROG	phrog_17196	kinase	other
UHGV-0097166_48	UniRef90	UniRef90_C7GBZ1	Peptidase S74 domain-containing protein	NA
UHGV-0097166_48	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0097166_48	Structural annotation	PF13619	NA	NA
UHGV-0097166_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0097166_49	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0097166_49	eggNOG-mapper	411463.EUBVEN_01507	NA	NA
UHGV-0097166_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0097166_49	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0097166_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0097166_50	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0097166_50	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0097166_50	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0097166_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097166_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097166_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0097166_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0097166_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0097166_55	UniRef90	UniRef90_A0A8E5Y3Q1	Phage antirepressor	NA
UHGV-0097166_55	eggNOG-mapper	641107.CDLVIII_0866	Phage antirepressor protein	NA
UHGV-0097166_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0097166_55	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0097166_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0097166_55	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0097166_56	AcrCatalog	cluster_63593	NA	NA
UHGV-0097166_57	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0097166_57	PHROG	phrog_19890	NA	unknown function
UHGV-0097166_57	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0097166_57	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0097166_57	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0097166_57	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0097166_57	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0097166_58	PHROG	phrog_22292	NA	unknown function
UHGV-0097166_61	UniRef90	UniRef90_A0A352SFG0	Spo0A_C domain-containing protein	NA
UHGV-0097166_61	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0097166_61	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0097166_62	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0097166_62	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097166_62	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0097166_62	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0097166_62	Pfam	PF13514	AAA domain	AAA_27
UHGV-0097166_62	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0097166_62	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0097166_64	PHROG	phrog_2164	NA	unknown function
UHGV-0097166_65	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0097166_67	Structural annotation	PF13973, PF04319, PF08962	NA	NA
UHGV-0097166_68	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097166_68	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0097166_68	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0097166_68	Pfam	PF03837	RecT family	RecT
UHGV-0097166_68	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0097166_68	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0097166_68	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0097166_69	PHROG	phrog_15480	methyltransferase	other
UHGV-0097166_69	UniRef90	UniRef90_A0A1C5WPJ5	Spermidine synthase	NA
UHGV-0097166_69	eggNOG-mapper	1232447.BAHW02000015_gene1049	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	NA
UHGV-0097166_69	COG	COG4262	Predicted spermidine synthase with an N-terminal membrane domain	NA
UHGV-0097166_69	Structural annotation	PF05401, MF_02100, NF041650, COG2813	NA	NA
UHGV-0097166_70	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0097166_70	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0097166_70	UniRef90	UniRef90_A0A352SIH6	Lactamase_B domain-containing protein	NA
UHGV-0097166_70	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0097166_70	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0097166_70	dbAPIS	APIS058	NA	NA
UHGV-0097166_70	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0097166_70	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0097166_71	PHROG	phrog_6724	NA	unknown function
UHGV-0097166_71	eggNOG-mapper	1463858.JOHR01000031_gene5587	NA	NA
UHGV-0097166_73	PHROG	phrog_19106	NA	unknown function
UHGV-0097166_73	UniRef90	UniRef90_UPI001D086F0C	GIY-YIG nuclease family protein	NA
UHGV-0097166_73	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0097166_73	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0097166_73	Structural annotation	TIGR01453	NA	NA
UHGV-0097166_76	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0097166_76	PHROG	phrog_12862	NA	unknown function
UHGV-0097166_76	UniRef90	UniRef90_A0A373KMK1	Methyltransferase	NA
UHGV-0097166_76	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0097166_76	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0097166_76	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0097166_76	COG	COG0863	DNA modification methylase	NA
UHGV-0097166_76	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0097166_78	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0097166_78	UniRef90	UniRef90_A0A352SFU9	DNA replication protein (Fragment)	NA
UHGV-0097166_78	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0097166_78	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097166_78	Structural annotation	TIGR01714	NA	NA
UHGV-0097166_82	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0097166_82	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0097166_82	Structural annotation	PF09038	NA	NA
UHGV-0097166_83	PHROG	phrog_15198	NA	unknown function
UHGV-0097166_83	UniRef90	UniRef90_UPI001BC83939	NA	NA
UHGV-0097166_83	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0097166_83	Pfam	PF04448	NA	DUF551
UHGV-0097166_83	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0097166_85	PHROG	phrog_10714	NA	unknown function
UHGV-0097166_85	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0097166_86	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0097166_87	PHROG	phrog_20593	NA	unknown function
UHGV-0097166_88	PHROG	phrog_874	NA	unknown function
UHGV-0097166_88	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-0097166_88	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0097166_91	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097166_91	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0097166_91	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097166_91	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0097166_91	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0097166_91	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097166_91	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097166_91	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097166_91	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0097166_93	PHROG	phrog_17284	NA	unknown function
UHGV-0097166_93	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0097166_93	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0097166_93	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0097166_93	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097166_93	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097166_94	PHROG	phrog_2776	NA	unknown function
UHGV-0097166_94	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0097166_94	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0097166_94	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0097166_96	eggNOG-mapper	1235790.C805_00061	NA	NA
UHGV-0097166_98	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0097166_98	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0097166_98	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0097166_99	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0097166_99	UniRef90	UniRef90_R6C2W3	DNA binding domain excisionase family	NA
UHGV-0097166_99	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0097166_99	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0097166_99	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0097166_99	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0097166_100	KOfam	K14059	int; integrase	NA
UHGV-0097166_100	PHROG	phrog_1	integrase	integration and excision
UHGV-0097166_100	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0097166_100	eggNOG-mapper	658088.HMPREF0987_01414	Phage integrase family	NA
UHGV-0097166_100	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0097166_100	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097166_100	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097166_100	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA