UHGV-0097188

Genome information

vOTU vOTU-020319

Genome length 30,018 bps

CDS count 48

Completeness 75.52% (medium-quality)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097188
vOTU ID	vOTU-020319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230555
BioSample	SAMEA3708495
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.23
Jumbo phage	No

Genome content
Genome length	30,018 bps
GC content	34.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.82%
Average CDS length	585.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097188_2	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0097188_2	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-0097188_6	UniRef90	UniRef90_UPI001C0EE701	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0097188_6	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0097188_7	PHROG	phrog_4433	NA	unknown function
UHGV-0097188_7	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0097188_7	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0097188_7	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0097188_8	PHROG	phrog_8470	NA	unknown function
UHGV-0097188_8	UniRef90	UniRef90_UPI001D0E6B3F	PcfJ domain-containing protein	NA
UHGV-0097188_8	eggNOG-mapper	411902.CLOBOL_05697	PcfJ-like protein	NA
UHGV-0097188_8	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0097188_8	Structural annotation	PF14284	NA	NA
UHGV-0097188_9	PHROG	phrog_15077	NA	unknown function
UHGV-0097188_9	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0097188_9	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0097188_9	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0097188_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0097188_10	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097188_10	UniRef90	UniRef90_A0A373VSB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097188_10	eggNOG-mapper	1292035.H476_1025	Endodeoxyribonuclease RusA	NA
UHGV-0097188_10	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0097188_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097188_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0097188_11	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0097188_11	PHROG	phrog_2668	NA	unknown function
UHGV-0097188_11	UniRef90	UniRef90_W1Q2J1	Methylase_S domain-containing protein	NA
UHGV-0097188_11	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0097188_11	PADLOC	Specificity_I_00134	Type I specificity subunit	RM
UHGV-0097188_11	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0097188_11	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0097188_12	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0097188_12	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0097188_12	UniRef90	UniRef90_UPI0018A97EF7	N-6 DNA methylase	NA
UHGV-0097188_12	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0097188_12	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0097188_12	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0097188_12	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0097188_12	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0097188_17	UniRef90	UniRef90_A0A373LPL3	Chemotaxis protein	NA
UHGV-0097188_17	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0097188_17	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0097188_18	PHROG	phrog_15198	NA	unknown function
UHGV-0097188_18	UniRef90	UniRef90_A0A373VSI6	NA	NA
UHGV-0097188_18	Pfam	PF04448	NA	DUF551
UHGV-0097188_19	PHROG	phrog_30559	NA	unknown function
UHGV-0097188_21	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097188_21	UniRef90	UniRef90_UPI001F065E7B	NA	NA
UHGV-0097188_21	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0097188_21	Pfam	PF12961	NA	DUF3850
UHGV-0097188_21	Structural annotation	PF12961, NF003443, COG4043	NA	NA
UHGV-0097188_23	PHROG	phrog_11237	NA	unknown function
UHGV-0097188_23	eggNOG-mapper	428125.CLOLEP_01348	NA	NA
UHGV-0097188_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0097188_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097188_24	UniRef90	UniRef90_A0A415MTD9	HNH endonuclease	NA
UHGV-0097188_24	eggNOG-mapper	574375.BAGA_00230	HNH endonuclease	NA
UHGV-0097188_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097188_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0097188_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0097188_26	UniRef90	UniRef90_A0A316SIU9	Terminase large subunit	NA
UHGV-0097188_26	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0097188_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0097188_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0097188_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0097188_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0097188_27	UniRef90	UniRef90_A0A316S734	Phage portal protein	NA
UHGV-0097188_27	eggNOG-mapper	926561.KB900623_gene767	Phage portal protein, HK97 family	NA
UHGV-0097188_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0097188_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0097188_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0097188_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0097188_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0097188_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0097188_28	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0097188_28	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0097188_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0097188_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0097188_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0097188_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097188_29	UniRef90	UniRef90_UPI001BA6BAB6	phage major capsid protein	NA
UHGV-0097188_29	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0097188_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097188_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097188_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0097188_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097188_30	PHROG	phrog_749	NA	unknown function
UHGV-0097188_30	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0097188_30	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-0097188_31	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0097188_31	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0097188_31	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0097188_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0097188_32	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-0097188_32	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0097188_33	PHROG	phrog_5509	neck protein	connector
UHGV-0097188_33	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0097188_33	eggNOG-mapper	1027396.LMOSA_21450	NA	NA
UHGV-0097188_33	Structural annotation	TIGR01725	NA	NA
UHGV-0097188_34	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0097188_34	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0097188_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0097188_38	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0097188_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0097188_38	UniRef90	UniRef90_A0A371ARP8	Phage tail tape measure protein	NA
UHGV-0097188_38	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-0097188_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0097188_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0097188_38	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0097188_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0097188_39	eggNOG-mapper	1069533.Sinf_0797	phage tail	NA
UHGV-0097188_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0097188_40	PHROG	phrog_3558	tail protein	tail
UHGV-0097188_40	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0097188_40	eggNOG-mapper	1123298.KB904077_gene470	Prophage endopeptidase tail	NA
UHGV-0097188_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0097188_40	COG	COG4926	Phage-related protein	NA
UHGV-0097188_40	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0097188_42	KOfam	K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	NA
UHGV-0097188_42	PHROG	phrog_35892	NA	unknown function
UHGV-0097188_42	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0097188_42	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0097188_42	Structural annotation	PF13306, PF10651, NF033188	NA	NA
UHGV-0097188_44	PHROG	phrog_4105	NA	unknown function
UHGV-0097188_44	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0097188_45	PHROG	phrog_443	holin	lysis
UHGV-0097188_45	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-0097188_45	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0097188_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0097188_45	Structural annotation	PF16945	NA	NA
UHGV-0097188_46	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0097188_46	PHROG	phrog_435	endolysin	lysis
UHGV-0097188_46	UniRef90	UniRef90_R5Z567	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097188_46	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0097188_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0097188_46	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097188_46	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0097188_47	UniRef90	UniRef90_A0A3B8VZ83	Cell filamentation protein Fic (Fragment)	NA
UHGV-0097188_47	eggNOG-mapper	411459.RUMOBE_02303	COG COG2184 Protein involved in cell division	NA
UHGV-0097188_47	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0097188_48	UniRef90	UniRef90_R5LBD3	Fic family protein	NA
UHGV-0097188_48	eggNOG-mapper	411459.RUMOBE_02303	COG COG2184 Protein involved in cell division	NA
UHGV-0097188_48	COG	COG2184	Fido, protein-threonine AMPylation domain	NA