UHGV-0097286

Genome information

Genome length 23,551 bps

CDS count 37

Completeness 69.56% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097286
vOTU ID	vOTU-034023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210881
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.79
Jumbo phage	No

Genome content
Genome length	23,551 bps
GC content	39.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.42%
Average CDS length	603.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097286_1	UniRef90	UniRef90_A0A6P1MHJ4	NA	NA
UHGV-0097286_1	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0097286_3	PHROG	phrog_24267	NA	unknown function
UHGV-0097286_3	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0097286_3	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0097286_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0097286_3	COG	COG4675	Phage tail collar domain	NA
UHGV-0097286_3	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0097286_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0097286_4	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0097286_4	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0097286_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0097286_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0097286_4	COG	COG4926	Phage-related protein	NA
UHGV-0097286_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0097286_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0097286_5	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0097286_5	eggNOG-mapper	1497679.EP56_07715	tail component	NA
UHGV-0097286_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0097286_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0097286_6	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0097286_6	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-0097286_6	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0097286_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0097286_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0097286_6	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0097286_7	PHROG	phrog_3033	NA	unknown function
UHGV-0097286_7	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-0097286_7	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0097286_8	PHROG	phrog_709	NA	unknown function
UHGV-0097286_8	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0097286_8	Structural annotation	PF11836	NA	NA
UHGV-0097286_9	PHROG	phrog_88	major tail protein	tail
UHGV-0097286_9	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-0097286_9	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0097286_9	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0097286_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0097286_9	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0097286_10	PHROG	phrog_78	tail terminator	connector
UHGV-0097286_10	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0097286_10	Structural annotation	PF20765	NA	NA
UHGV-0097286_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0097286_11	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0097286_11	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0097286_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0097286_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0097286_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0097286_12	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0097286_12	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0097286_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0097286_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0097286_13	PHROG	phrog_2550	NA	unknown function
UHGV-0097286_13	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0097286_13	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0097286_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0097286_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097286_14	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0097286_14	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0097286_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097286_14	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0097286_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097286_14	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097286_15	KOfam	K06904	NA	NA
UHGV-0097286_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0097286_15	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0097286_15	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0097286_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0097286_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0097286_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0097286_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0097286_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0097286_16	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0097286_16	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0097286_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0097286_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0097286_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0097286_16	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0097286_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0097286_17	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0097286_17	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0097286_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0097286_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0097286_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0097286_17	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0097286_18	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0097286_18	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0097286_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0097286_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0097286_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0097286_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0097286_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097286_20	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0097286_20	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0097286_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097286_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0097286_20	Structural annotation	TIGR02646	NA	NA
UHGV-0097286_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097286_21	UniRef90	UniRef90_A0A6N2R4S8	Sigma70_r4 domain-containing protein	NA
UHGV-0097286_21	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0097286_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0097286_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0097286_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0097286_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0097286_22	Structural annotation	PF14354, PF02701, TIGR03655, NF041869, COG3478	NA	NA
UHGV-0097286_23	PHROG	phrog_7488	NA	unknown function
UHGV-0097286_23	Structural annotation	PF04319, PF08962	NA	NA
UHGV-0097286_24	PHROG	phrog_5444	NA	unknown function
UHGV-0097286_24	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-0097286_25	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0097286_25	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0097286_25	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0097286_25	eggNOG-mapper	596329.HMPREF0631_0668	Belongs to the dCTP deaminase family	NA
UHGV-0097286_25	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0097286_25	COG	COG0717	dCTP deaminase	NA
UHGV-0097286_25	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0097286_26	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0097286_26	UniRef90	UniRef90_UPI0009300F02	helix-turn-helix transcriptional regulator	NA
UHGV-0097286_26	eggNOG-mapper	1128111.HMPREF0870_01603	DNA-binding helix-turn-helix protein	NA
UHGV-0097286_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097286_26	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0097286_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0097286_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097286_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0097286_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097286_29	UniRef90	UniRef90_A0A7X5DCG3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097286_29	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0097286_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0097286_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097286_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0097286_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0097286_30	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0097286_30	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0097286_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0097286_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097286_30	Structural annotation	PF14297	NA	NA
UHGV-0097286_31	PHROG	phrog_2113	NA	unknown function
UHGV-0097286_31	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0097286_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0097286_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097286_32	UniRef90	UniRef90_UPI0004AC739F	single-stranded DNA-binding protein	NA
UHGV-0097286_32	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0097286_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0097286_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0097286_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097286_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0097286_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0097286_33	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097286_33	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0097286_33	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0097286_33	Pfam	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)	Paired_CXXCH_1
UHGV-0097286_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0097286_34	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0097286_34	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0097286_34	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0097286_35	PHROG	phrog_14970	NA	unknown function
UHGV-0097286_35	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0097286_35	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0097286_35	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0097286_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0097286_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0097286_36	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0097286_36	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0097286_36	eggNOG-mapper	40522.A8ASN2_BPA50	Siphovirus Gp157	NA
UHGV-0097286_36	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0097286_36	Structural annotation	PF05565, NF002139	NA	NA