UHGV-0097348

Genome information

Genome length 32,641 bps

CDS count 52

Completeness 89.04% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097348
vOTU ID	vOTU-042132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202348
BioSample	SAMEA3449231
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.7
Jumbo phage	No

Genome content
Genome length	32,641 bps
GC content	49.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.93%
Average CDS length	568.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097348_1	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0097348_1	UniRef90	UniRef90_A0A829FB24	Phage replication initiation protein	NA
UHGV-0097348_1	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-0097348_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097348_7	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0097348_7	UniRef90	UniRef90_UPI000CCBE575	Rha family transcriptional regulator	NA
UHGV-0097348_7	eggNOG-mapper	552396.HMPREF0863_00753	AntA/AntB antirepressor	NA
UHGV-0097348_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0097348_7	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0097348_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0097348_7	Structural annotation	PF03374, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0097348_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0097348_8	UniRef90	UniRef90_UPI0011C7EC16	phage antirepressor KilAC domain-containing protein	NA
UHGV-0097348_8	eggNOG-mapper	697281.Mahau_2840	BRO family, N-terminal domain	NA
UHGV-0097348_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0097348_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0097348_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0097348_10	PHROG	phrog_3306	NA	unknown function
UHGV-0097348_10	UniRef90	UniRef90_UPI001EF738B0	NA	NA
UHGV-0097348_10	eggNOG-mapper	469617.FUAG_01932	NA	NA
UHGV-0097348_10	Pfam	PF19670	NA	DUF6173
UHGV-0097348_13	UniRef90	UniRef90_UPI00117C9CA9	helix-turn-helix domain-containing protein	NA
UHGV-0097348_13	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0097348_13	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0097348_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0097348_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0097348_14	UniRef90	UniRef90_A0A7I8D1H8	Putative antirepressor - phage associated	NA
UHGV-0097348_14	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-0097348_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0097348_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0097348_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0097348_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0097348_15	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0097348_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097348_15	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0097348_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097348_16	UniRef90	UniRef90_A0A413G3S4	XRE family transcriptional regulator	NA
UHGV-0097348_16	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0097348_16	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0097348_16	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0097348_16	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0097348_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0097348_18	PHROG	phrog_18955	NA	unknown function
UHGV-0097348_18	UniRef90	UniRef90_A0A373Q9Y2	NAGPA domain-containing protein	NA
UHGV-0097348_18	eggNOG-mapper	1297617.JPJD01000099_gene2174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097348_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0097348_18	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0097348_18	Structural annotation	PF09992, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0097348_19	PHROG	phrog_1129	holin	lysis
UHGV-0097348_19	UniRef90	UniRef90_UPI001C0F421C	phage holin family protein	NA
UHGV-0097348_19	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0097348_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0097348_19	Structural annotation	PF06946	NA	NA
UHGV-0097348_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097348_20	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0097348_20	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0097348_20	Structural annotation	PF17375	NA	NA
UHGV-0097348_21	PHROG	phrog_1863	NA	unknown function
UHGV-0097348_21	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0097348_21	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0097348_23	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0097348_23	UniRef90	UniRef90_A0A1Y4WKX6	NA	NA
UHGV-0097348_23	Pfam	PF19789	NA	DUF6273
UHGV-0097348_23	Structural annotation	PF19789	NA	NA
UHGV-0097348_24	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0097348_24	UniRef90	UniRef90_UPI0006870237	phage tail protein	NA
UHGV-0097348_24	eggNOG-mapper	1227352.C173_01662	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0097348_24	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0097348_24	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0097348_25	PHROG	phrog_521	tail protein	tail
UHGV-0097348_25	UniRef90	UniRef90_UPI00068242A7	NA	NA
UHGV-0097348_25	eggNOG-mapper	1226322.HMPREF1545_04034	NA	NA
UHGV-0097348_25	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0097348_25	COG	COG3778	NA	NA
UHGV-0097348_25	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0097348_26	PHROG	phrog_1608	tail protein	tail
UHGV-0097348_26	UniRef90	UniRef90_UPI0006805614	baseplate J/gp47 family protein	NA
UHGV-0097348_26	eggNOG-mapper	1226322.HMPREF1545_04035	baseplate J-like protein	NA
UHGV-0097348_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0097348_26	COG	COG3299	NA	NA
UHGV-0097348_26	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0097348_27	PHROG	phrog_120	baseplate protein	tail
UHGV-0097348_27	UniRef90	UniRef90_U2QSJ0	Phage protein XkdS domain protein	NA
UHGV-0097348_27	eggNOG-mapper	1226322.HMPREF1545_04036	NA	NA
UHGV-0097348_27	Pfam	PF10934	NA	DUF2634
UHGV-0097348_27	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0097348_27	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0097348_28	PHROG	phrog_579	NA	unknown function
UHGV-0097348_28	UniRef90	UniRef90_UPI0006828886	NA	NA
UHGV-0097348_28	eggNOG-mapper	756499.Desde_1339	NA	NA
UHGV-0097348_28	Pfam	PF10844	NA	DUF2577
UHGV-0097348_28	Structural annotation	PF10844	NA	NA
UHGV-0097348_29	PHROG	phrog_400	tail protein	tail
UHGV-0097348_29	UniRef90	UniRef90_W4V9W9	Phage-like element PBSX protein XkdQ	NA
UHGV-0097348_29	eggNOG-mapper	1226322.HMPREF1545_04038	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0097348_29	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0097348_29	Structural annotation	PF06605, NF033848, COG4379	NA	NA
UHGV-0097348_30	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0097348_30	PHROG	phrog_380	endolysin	lysis
UHGV-0097348_30	UniRef90	UniRef90_A0A1M6M4M1	Nucleoid-associated protein YgaU, contains BON and LysM domains	NA
UHGV-0097348_30	eggNOG-mapper	1121344.JHZO01000003_gene962	PFAM LysM domain	NA
UHGV-0097348_30	Pfam	PF01476	LysM domain	LysM
UHGV-0097348_30	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0097348_30	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0097348_31	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0097348_31	UniRef90	UniRef90_W4V8Q0	Tail length tape measure protein	NA
UHGV-0097348_31	eggNOG-mapper	720554.Clocl_0689	sister chromatid segregation	NA
UHGV-0097348_31	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0097348_31	Structural annotation	PF05537, TIGR01760, COG3941	NA	NA
UHGV-0097348_32	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0097348_32	UniRef90	UniRef90_U2QSJ4	Phage XkdN-like protein	NA
UHGV-0097348_32	eggNOG-mapper	1226322.HMPREF1545_04041	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0097348_32	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0097348_32	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0097348_33	PHROG	phrog_365	tail protein	tail
UHGV-0097348_33	UniRef90	UniRef90_A0A1C6AK33	Phage-like element PBSX protein xkdM	NA
UHGV-0097348_33	eggNOG-mapper	1226322.HMPREF1545_04042	Phage tail tube protein	NA
UHGV-0097348_33	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0097348_33	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0097348_34	PHROG	phrog_279	tail sheath	tail
UHGV-0097348_34	UniRef90	UniRef90_UPI0009E51897	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0097348_34	eggNOG-mapper	1226322.HMPREF1545_04043	PFAM Phage tail sheath protein	NA
UHGV-0097348_34	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0097348_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0097348_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0097348_34	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0097348_35	PHROG	phrog_966	NA	unknown function
UHGV-0097348_35	eggNOG-mapper	1122919.KB905569_gene2947	NA	NA
UHGV-0097348_36	PHROG	phrog_525	NA	unknown function
UHGV-0097348_36	UniRef90	UniRef90_M9L968	Outer membrane protein	NA
UHGV-0097348_36	eggNOG-mapper	1121344.JHZO01000003_gene968	NA	NA
UHGV-0097348_36	Pfam	PF20765	NA	DUF6838
UHGV-0097348_36	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0097348_37	UniRef90	UniRef90_A0A1M6M4I9	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0097348_37	eggNOG-mapper	1121121.KB894312_gene3153	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0097348_37	Structural annotation	PF17395, COG5005	NA	NA
UHGV-0097348_38	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0097348_38	UniRef90	UniRef90_UPI001958CF31	ABC transporter ATP-binding protein	NA
UHGV-0097348_38	eggNOG-mapper	1226322.HMPREF1545_04046	NA	NA
UHGV-0097348_38	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0097348_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0097348_39	UniRef90	UniRef90_UPI0006821A34	phage head-tail connector protein	NA
UHGV-0097348_39	eggNOG-mapper	1226322.HMPREF1545_04047	NA	NA
UHGV-0097348_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0097348_40	Structural annotation	PF12949, PF18885	NA	NA
UHGV-0097348_41	UniRef90	UniRef90_A0A644YJM4	S-l_SbsC_C domain-containing protein	NA
UHGV-0097348_41	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0097348_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0097348_42	UniRef90	UniRef90_UPI000681A995	phage scaffolding protein	NA
UHGV-0097348_42	eggNOG-mapper	1118054.CAGW01000102_gene4698	Phage minor structural protein GP20	NA
UHGV-0097348_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0097348_42	Structural annotation	PF06810	NA	NA
UHGV-0097348_43	PHROG	phrog_2700	NA	unknown function
UHGV-0097348_43	UniRef90	UniRef90_UPI001B2BAC75	PH domain-containing protein	NA
UHGV-0097348_43	eggNOG-mapper	1234664.AMRO01000024_gene1829	Short C-terminal domain	NA
UHGV-0097348_43	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0097348_43	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0097348_43	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0097348_45	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0097348_45	UniRef90	UniRef90_UPI0006837AE2	minor capsid protein	NA
UHGV-0097348_45	eggNOG-mapper	1226322.HMPREF1545_04053	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0097348_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0097348_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0097348_45	COG	COG2369	NA	NA
UHGV-0097348_45	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0097348_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0097348_46	UniRef90	UniRef90_A0A1M6M3Z9	Phage portal protein, SPP1 family	NA
UHGV-0097348_46	eggNOG-mapper	1226322.HMPREF1545_04054	phage portal protein, SPP1	NA
UHGV-0097348_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097348_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0097348_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097348_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0097348_47	UniRef90	UniRef90_UPI00068296FC	PBSX family phage terminase large subunit	NA
UHGV-0097348_47	eggNOG-mapper	1226322.HMPREF1545_04055	Phage terminase, large subunit, PBSX family	NA
UHGV-0097348_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0097348_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0097348_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097348_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097348_47	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0097348_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0097348_48	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0097348_48	UniRef90	UniRef90_UPI001667275A	terminase small subunit	NA
UHGV-0097348_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0097348_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097348_50	UniRef90	UniRef90_A0A1D9FMP9	RNA polymerase subunit sigma-24	NA
UHGV-0097348_50	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0097348_50	Structural annotation	PF02996	NA	NA
UHGV-0097348_51	PHROG	phrog_7134	NA	unknown function
UHGV-0097348_51	UniRef90	UniRef90_A0A2T4U2L7	Pathogenicity island protein	NA
UHGV-0097348_51	eggNOG-mapper	411902.CLOBOL_06678	NA	NA
UHGV-0097348_51	Structural annotation	PF13601	NA	NA
UHGV-0097348_52	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0097348_52	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0097348_52	UniRef90	UniRef90_A0A8F2JBB3	AAA family ATPase	NA
UHGV-0097348_52	eggNOG-mapper	1226322.HMPREF1545_00017	DnaB-like helicase C terminal domain	NA
UHGV-0097348_52	Pfam	PF13481	AAA domain	AAA_25
UHGV-0097348_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-0097348_52	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA