UHGV-0097434

Genome information

Genome length 34,184 bps

CDS count 43

Completeness 83.95% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097434
vOTU ID	vOTU-032779
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201411
BioSample	SAMEA3449149
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.45
Jumbo phage	No

Genome content
Genome length	34,184 bps
GC content	40.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.75%
Average CDS length	739.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097434_1	PHROG	phrog_199	holin	lysis
UHGV-0097434_1	UniRef90	UniRef90_W0U6A0	Holin	NA
UHGV-0097434_1	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0097434_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097434_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097434_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0097434_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097434_2	PHROG	phrog_21357	endolysin	lysis
UHGV-0097434_2	UniRef90	UniRef90_R6UJ33	Putative peptidoglycan binding domain protein	NA
UHGV-0097434_2	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-0097434_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0097434_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0097434_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0097434_2	Structural annotation	PF05382, COG3409	NA	NA
UHGV-0097434_4	PHROG	phrog_18190	NA	unknown function
UHGV-0097434_4	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0097434_4	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0097434_5	PHROG	phrog_1194	NA	unknown function
UHGV-0097434_5	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0097434_5	Pfam	PF20458	NA	DUF6711
UHGV-0097434_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0097434_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0097434_6	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0097434_6	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0097434_6	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0097434_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0097434_7	PHROG	phrog_8355	NA	unknown function
UHGV-0097434_7	UniRef90	UniRef90_UPI001D0309B6	bacteriophage Gp15 family protein	NA
UHGV-0097434_7	eggNOG-mapper	1122918.KB907248_gene4490	Bacteriophage Gp15 protein	NA
UHGV-0097434_8	PHROG	phrog_8300	NA	unknown function
UHGV-0097434_8	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0097434_8	Structural annotation	PF06854	NA	NA
UHGV-0097434_9	PHROG	phrog_820	major tail protein	tail
UHGV-0097434_9	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0097434_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0097434_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0097434_10	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0097434_10	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0097434_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0097434_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0097434_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0097434_11	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0097434_12	PHROG	phrog_8710	NA	unknown function
UHGV-0097434_12	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0097434_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0097434_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097434_13	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0097434_14	PHROG	phrog_1378	NA	unknown function
UHGV-0097434_14	eggNOG-mapper	195103.CPF_0957	NA	NA
UHGV-0097434_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0097434_15	UniRef90	UniRef90_A0A355TYM5	Capsid protein	NA
UHGV-0097434_15	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0097434_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0097434_17	Structural annotation	PF01281	NA	NA
UHGV-0097434_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097434_19	UniRef90	UniRef90_A0A2N0UXT6	Phage minor capsid protein 2	NA
UHGV-0097434_19	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0097434_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097434_19	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0097434_19	Structural annotation	PF06152	NA	NA
UHGV-0097434_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097434_20	UniRef90	UniRef90_UPI001F14233C	capsid protein	NA
UHGV-0097434_20	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0097434_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097434_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097434_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097434_21	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0097434_21	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0097434_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097434_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097434_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0097434_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0097434_22	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0097434_22	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0097434_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0097434_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0097434_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0097434_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097434_23	UniRef90	UniRef90_UPI00131A5489	RNA polymerase subunit sigma-24	NA
UHGV-0097434_23	eggNOG-mapper	1118057.CAGX01000058_gene94	sigma factor activity	NA
UHGV-0097434_23	Pfam	PF07374	NA	DUF1492
UHGV-0097434_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0097434_23	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0097434_24	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0097434_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0097434_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097434_26	UniRef90	UniRef90_A0A412L7W0	ATP-dependent helicase	NA
UHGV-0097434_26	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0097434_26	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0097434_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0097434_26	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097434_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0097434_26	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0097434_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097434_27	UniRef90	UniRef90_A0A348Z936	Nuclease	NA
UHGV-0097434_27	eggNOG-mapper	1118055.CAGU01000013_gene794	VRR_NUC	NA
UHGV-0097434_27	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0097434_28	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097434_28	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0097434_28	eggNOG-mapper	1274524.BSONL12_06063	Virulence-associated protein E	NA
UHGV-0097434_28	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0097434_28	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0097434_28	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0097434_29	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0097434_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0097434_29	UniRef90	UniRef90_A0A348Z938	POLAc domain-containing protein	NA
UHGV-0097434_29	eggNOG-mapper	1274524.BSONL12_06038	DNA polymerase A domain	NA
UHGV-0097434_29	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0097434_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0097434_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0097434_29	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0097434_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097434_30	UniRef90	UniRef90_A0A348Z939	NA	NA
UHGV-0097434_30	eggNOG-mapper	1123288.SOV_6c00600	NA	NA
UHGV-0097434_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0097434_30	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0097434_31	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097434_31	UniRef90	UniRef90_A0A348Z940	NA	NA
UHGV-0097434_31	eggNOG-mapper	696281.Desru_1075	NA	NA
UHGV-0097434_31	Pfam	PF10926	NA	DUF2800
UHGV-0097434_31	COG	COG2887	RecB family exonuclease	NA
UHGV-0097434_31	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0097434_32	PHROG	phrog_408	NA	unknown function
UHGV-0097434_33	PHROG	phrog_15609	NA	unknown function
UHGV-0097434_33	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0097434_33	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0097434_33	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0097434_34	PHROG	phrog_8470	NA	unknown function
UHGV-0097434_34	UniRef90	UniRef90_UPI0005D16C58	PcfJ domain-containing protein	NA
UHGV-0097434_34	eggNOG-mapper	1514668.JOOA01000001_gene226	PcfJ-like protein	NA
UHGV-0097434_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0097434_35	PHROG	phrog_38338	NA	unknown function
UHGV-0097434_38	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0097434_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0097434_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097434_40	UniRef90	UniRef90_A0A1Y4F6Q1	Transcriptional regulator	NA
UHGV-0097434_40	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0097434_40	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0097434_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097434_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0097434_42	PHROG	phrog_1847	NA	unknown function
UHGV-0097434_42	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0097434_42	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0097434_42	Pfam	PF13250	NA	DUF4041
UHGV-0097434_42	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0097434_42	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0097434_42	Structural annotation	PF13250	NA	NA
UHGV-0097434_43	KOfam	K14059	int; integrase	NA
UHGV-0097434_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0097434_43	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0097434_43	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0097434_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097434_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0097434_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA