UHGV-0097690

Genome information

Genome length 41,411 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097690
vOTU ID	vOTU-014540
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203040
BioSample	SAMEA3449181
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.79
Jumbo phage	No

Genome content
Genome length	41,411 bps
GC content	44.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.89%
Average CDS length	646.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097690_1	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0097690_1	UniRef90	UniRef90_A0A174Z3H5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0097690_1	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0097690_1	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0097690_1	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0097690_3	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0097690_3	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0097690_3	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0097690_5	KOfam	K14059	int; integrase	NA
UHGV-0097690_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0097690_5	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0097690_5	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0097690_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097690_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097690_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0097690_6	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-0097690_7	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0097690_7	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0097690_7	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0097690_7	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0097690_7	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0097690_7	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0097690_7	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0097690_7	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0097690_7	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0097690_7	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0097690_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0097690_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097690_9	UniRef90	UniRef90_A0A3B8P2Z5	Transcriptional regulator	NA
UHGV-0097690_9	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0097690_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097690_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097690_10	UniRef90	UniRef90_A0A2N6UIC0	NA	NA
UHGV-0097690_10	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-0097690_10	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0097690_10	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0097690_13	PHROG	phrog_2211	NA	unknown function
UHGV-0097690_13	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-0097690_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0097690_15	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0097690_15	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0097690_18	Structural annotation	PF04218, NF040595, COG3415	NA	NA
UHGV-0097690_19	PHROG	phrog_38338	NA	unknown function
UHGV-0097690_19	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0097690_19	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0097690_20	PHROG	phrog_8470	NA	unknown function
UHGV-0097690_20	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0097690_20	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0097690_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0097690_20	Structural annotation	PF14284	NA	NA
UHGV-0097690_22	PHROG	phrog_15609	NA	unknown function
UHGV-0097690_22	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0097690_22	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0097690_22	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0097690_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0097690_23	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0097690_23	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0097690_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0097690_23	Structural annotation	PF05565	NA	NA
UHGV-0097690_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097690_24	UniRef90	UniRef90_UPI001D05DFA5	ATP-binding protein	NA
UHGV-0097690_24	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0097690_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0097690_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0097690_25	PHROG	phrog_18107	NA	unknown function
UHGV-0097690_25	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0097690_25	eggNOG-mapper	536233.CLO_1545	NA	NA
UHGV-0097690_25	Structural annotation	PF05037	NA	NA
UHGV-0097690_26	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0097690_26	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0097690_26	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0097690_26	Pfam	PF06048	NA	DUF927
UHGV-0097690_26	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0097690_26	COG	COG5519	NA	NA
UHGV-0097690_26	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0097690_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0097690_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097690_28	UniRef90	UniRef90_UPI000CF3D2DC	helix-turn-helix domain-containing protein	NA
UHGV-0097690_28	eggNOG-mapper	1507.HMPREF0262_02570	sequence-specific DNA binding	NA
UHGV-0097690_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097690_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097690_29	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0097690_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097690_29	UniRef90	UniRef90_A0A6N8HZM3	Putative DNA repair helicase RadD	NA
UHGV-0097690_29	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0097690_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0097690_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0097690_29	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0097690_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097690_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0097690_29	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0097690_30	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097690_30	UniRef90	UniRef90_A0A150BAU8	VRR-NUC domain-containing protein	NA
UHGV-0097690_30	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0097690_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0097690_30	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0097690_32	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0097690_32	UniRef90	UniRef90_A0A7X8EV86	NA	NA
UHGV-0097690_32	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0097690_32	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0097690_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097690_35	UniRef90	UniRef90_A0A7I8D1K2	Sigma70_r4 domain-containing protein	NA
UHGV-0097690_35	eggNOG-mapper	1392487.JIAD01000001_gene536	sigma factor activity	NA
UHGV-0097690_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0097690_35	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0097690_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0097690_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097690_36	UniRef90	UniRef90_B0MKX5	HNHc domain-containing protein	NA
UHGV-0097690_36	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0097690_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097690_37	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0097690_37	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0097690_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0097690_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0097690_38	UniRef90	UniRef90_B0MKW5	Phage portal protein, HK97 family	NA
UHGV-0097690_38	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0097690_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0097690_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0097690_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0097690_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0097690_40	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0097690_40	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0097690_40	UniRef90	UniRef90_A0A2V2D6Q6	N6_Mtase domain-containing protein	NA
UHGV-0097690_40	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0097690_40	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0097690_40	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0097690_40	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0097690_40	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0097690_41	KOfam	K06904	NA	NA
UHGV-0097690_41	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0097690_41	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-0097690_41	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0097690_41	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0097690_41	COG	COG3740	Phage head maturation protease	NA
UHGV-0097690_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0097690_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097690_42	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-0097690_42	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0097690_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097690_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097690_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0097690_42	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097690_43	PHROG	phrog_6865	NA	unknown function
UHGV-0097690_43	Structural annotation	PF01281	NA	NA
UHGV-0097690_44	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0097690_44	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-0097690_44	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0097690_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0097690_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0097690_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0097690_45	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0097690_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0097690_46	Structural annotation	PF05657	NA	NA
UHGV-0097690_47	PHROG	phrog_88	major tail protein	tail
UHGV-0097690_47	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-0097690_47	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0097690_47	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0097690_48	eggNOG-mapper	1118057.CAGX01000020_gene1618	Phage Mu protein F like protein	NA
UHGV-0097690_48	COG	COG2369	NA	NA
UHGV-0097690_49	PHROG	phrog_34144	NA	unknown function
UHGV-0097690_49	eggNOG-mapper	1118057.CAGX01000020_gene1617	NA	NA
UHGV-0097690_49	Structural annotation	PF20111	NA	NA
UHGV-0097690_50	Structural annotation	PF11836	NA	NA
UHGV-0097690_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0097690_51	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-0097690_51	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-0097690_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0097690_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0097690_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0097690_51	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0097690_53	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0097690_54	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0097690_54	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0097690_54	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-0097690_54	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-0097690_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0097690_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0097690_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0097690_54	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0097690_55	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0097690_56	PHROG	phrog_25468	NA	unknown function
UHGV-0097690_56	UniRef90	UniRef90_B0MKT5	Hep/Hag repeat protein	NA
UHGV-0097690_56	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0097690_56	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0097690_56	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0097690_58	PHROG	phrog_199	holin	lysis
UHGV-0097690_58	UniRef90	UniRef90_A0A174Z3N9	Phage-related holin (Lysis protein)	NA
UHGV-0097690_58	eggNOG-mapper	946235.CAER01000065_gene2430	Bacteriophage holin family	NA
UHGV-0097690_58	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097690_58	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097690_58	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0097690_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097690_59	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0097690_59	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0097690_59	UniRef90	UniRef90_R6RKB1	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0097690_59	eggNOG-mapper	515620.EUBELI_01811	NA	NA
UHGV-0097690_59	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0097690_59	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0097690_59	Structural annotation	PF01551, PF18342, MF_01354, MF_00664, NF040883, COG0739	NA	NA
UHGV-0097690_60	PHROG	phrog_22978	NA	unknown function
UHGV-0097690_60	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0097690_60	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5