UHGV-0097717

Genome information

Genome length 26,887 bps

CDS count 38

Completeness 57.27% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097717
vOTU ID	vOTU-041771
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_231408
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.83
Jumbo phage	No

Genome content
Genome length	26,887 bps
GC content	49.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.66%
Average CDS length	635.21 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097717_2	PHROG	phrog_28631	NA	unknown function
UHGV-0097717_2	UniRef90	UniRef90_A0A6L9HTL4	Gln_amidase domain-containing protein	NA
UHGV-0097717_2	eggNOG-mapper	411464.DESPIG_01650	Phage Mu protein F like protein	NA
UHGV-0097717_2	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0097717_2	COG	COG2369	NA	NA
UHGV-0097717_3	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0097717_3	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0097717_4	PHROG	phrog_6473	NA	unknown function
UHGV-0097717_4	eggNOG-mapper	1160721.RBI_I00624	NA	NA
UHGV-0097717_5	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0097717_5	UniRef90	UniRef90_UPI0009C08671	minor capsid protein	NA
UHGV-0097717_5	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0097717_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0097717_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0097717_5	COG	COG2369	NA	NA
UHGV-0097717_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0097717_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0097717_6	UniRef90	UniRef90_A0A1M6P1E7	Phage portal protein, SPP1 family	NA
UHGV-0097717_6	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0097717_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097717_6	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0097717_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0097717_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097717_7	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0097717_7	UniRef90	UniRef90_A0A1M6P1A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0097717_7	eggNOG-mapper	1273103.NM10_01089	Phage terminase, large subunit	NA
UHGV-0097717_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0097717_7	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0097717_7	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097717_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097717_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0097717_8	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0097717_8	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0097717_8	UniRef90	UniRef90_A0A1M6P1M7	Phage terminase small subunit	NA
UHGV-0097717_8	eggNOG-mapper	568816.Acin_1387	Terminase small subunit	NA
UHGV-0097717_8	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0097717_8	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0097717_8	Structural annotation	PF03592, PF06056, COG3728	NA	NA
UHGV-0097717_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097717_10	UniRef90	UniRef90_UPI0008EE302B	NA	NA
UHGV-0097717_10	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0097717_10	Pfam	PF07374	NA	DUF1492
UHGV-0097717_10	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0097717_11	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0097717_11	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097717_11	UniRef90	UniRef90_A0A1M6SLL7	SNF2 family N-terminal domain-containing protein	NA
UHGV-0097717_11	eggNOG-mapper	592028.GCWU000321_01367	SNF2 family	NA
UHGV-0097717_11	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0097717_11	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0097717_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097717_11	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0097717_11	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0097717_12	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097717_12	UniRef90	UniRef90_UPI0008E6921F	VRR-NUC domain-containing protein	NA
UHGV-0097717_12	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-0097717_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0097717_12	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0097717_13	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097717_13	UniRef90	UniRef90_UPI000C7D00DC	virulence-associated E family protein	NA
UHGV-0097717_13	eggNOG-mapper	592028.GCWU000321_01365	Virulence-associated protein E	NA
UHGV-0097717_13	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0097717_13	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0097717_13	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0097717_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-0097717_14	UniRef90	UniRef90_A0A848EVQ9	NA	NA
UHGV-0097717_14	eggNOG-mapper	706434.HMPREF9429_00542	NA	NA
UHGV-0097717_14	Pfam	PF11753	NA	DUF3310
UHGV-0097717_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0097717_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0097717_15	UniRef90	UniRef90_UPI0009421C69	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097717_15	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0097717_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0097717_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0097717_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0097717_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097717_15	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0097717_16	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0097717_17	Structural annotation	NF041588	NA	NA
UHGV-0097717_18	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0097717_18	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0097717_18	UniRef90	UniRef90_A0A1M6SMD2	DNA polymerase	NA
UHGV-0097717_18	eggNOG-mapper	592028.GCWU000321_01364	DNA polymerase	NA
UHGV-0097717_18	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0097717_18	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0097717_18	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0097717_19	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097717_19	UniRef90	UniRef90_UPI000C7E2517	NA	NA
UHGV-0097717_19	eggNOG-mapper	592028.GCWU000321_01363	NA	NA
UHGV-0097717_19	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0097717_19	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0097717_20	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0097717_20	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097717_20	UniRef90	UniRef90_UPI001F33F7FB	NA	NA
UHGV-0097717_20	eggNOG-mapper	592028.GCWU000321_01362	NA	NA
UHGV-0097717_20	Pfam	PF10926	NA	DUF2800
UHGV-0097717_20	COG	COG2887	RecB family exonuclease	NA
UHGV-0097717_20	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0097717_21	PHROG	phrog_18562	NA	unknown function
UHGV-0097717_21	eggNOG-mapper	592028.GCWU000321_01361	NA	NA
UHGV-0097717_22	KOfam	K24451	zim; modification methylase	NA
UHGV-0097717_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0097717_22	UniRef90	UniRef90_U7UP84	Methyltransferase	NA
UHGV-0097717_22	eggNOG-mapper	1111454.HMPREF1250_1036	DNA methylase	NA
UHGV-0097717_22	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0097717_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0097717_22	COG	COG0863	DNA modification methylase	NA
UHGV-0097717_22	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0097717_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0097717_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097717_23	UniRef90	UniRef90_U7ULX2	Helicase C-terminal domain protein	NA
UHGV-0097717_23	eggNOG-mapper	1111454.HMPREF1250_1035	DEAD-like helicases superfamily	NA
UHGV-0097717_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0097717_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097717_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0097717_23	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0097717_25	PHROG	phrog_25045	NA	unknown function
UHGV-0097717_25	UniRef90	UniRef90_A0A1M6P3V4	LysM domain-containing protein	NA
UHGV-0097717_25	eggNOG-mapper	1273103.NM10_06871	LysM domain	NA
UHGV-0097717_25	COG	COG1388	LysM repeat	NA
UHGV-0097717_25	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0097717_26	UniRef90	UniRef90_R7MYL9	Prophage LambdaCh01 DNA binding domain excisionase family	NA
UHGV-0097717_26	eggNOG-mapper	697281.Mahau_2930	TIGRFAM DNA binding domain protein, excisionase family	NA
UHGV-0097717_27	PHROG	phrog_2211	NA	unknown function
UHGV-0097717_27	UniRef90	UniRef90_A0A0A8WJ72	Putative phage protein	NA
UHGV-0097717_27	eggNOG-mapper	1352230.S6B1N1_9CAUD	NA	NA
UHGV-0097717_33	eggNOG-mapper	679201.HMPREF9334_00299	NA	NA
UHGV-0097717_33	Structural annotation	PF02257	NA	NA
UHGV-0097717_35	UniRef90	UniRef90_UPI0008D90F56	helix-turn-helix domain-containing protein	NA
UHGV-0097717_35	eggNOG-mapper	1415775.U729_2579	NA	NA
UHGV-0097717_35	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0097717_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0097717_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097717_36	UniRef90	UniRef90_UPI0005CA40F3	helix-turn-helix domain-containing protein	NA
UHGV-0097717_36	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0097717_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097717_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097717_36	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0097717_37	PHROG	phrog_20936	NA	unknown function
UHGV-0097717_37	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0097717_37	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0097717_37	Structural annotation	PF06114	NA	NA