UHGV-0097729

Genome information

Genome length 28,642 bps

CDS count 57

Completeness 71.01% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097729
vOTU ID	vOTU-036775
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_215869
BioSample	SAMEA3541505
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.02
Jumbo phage	No

Genome content
Genome length	28,642 bps
GC content	50.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.71%
Average CDS length	455.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097729_1	PHROG	phrog_23464	NA	unknown function
UHGV-0097729_1	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0097729_1	eggNOG-mapper	1211814.CAPG01000074_gene3445	Phage tail tape measure protein TP901	NA
UHGV-0097729_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0097729_1	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0097729_2	PHROG	phrog_709	NA	unknown function
UHGV-0097729_2	eggNOG-mapper	1384066.JAGT01000001_gene931	NA	NA
UHGV-0097729_2	Structural annotation	PF11836	NA	NA
UHGV-0097729_3	PHROG	phrog_88	major tail protein	tail
UHGV-0097729_3	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-0097729_3	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0097729_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0097729_3	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0097729_4	PHROG	phrog_78	tail terminator	connector
UHGV-0097729_4	eggNOG-mapper	641112.ACOK01000108_gene1803	NA	NA
UHGV-0097729_4	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0097729_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0097729_5	UniRef90	UniRef90_UPI000F5C033A	HK97 gp10 family phage protein	NA
UHGV-0097729_5	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0097729_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0097729_5	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0097729_6	PHROG	phrog_19734	NA	unknown function
UHGV-0097729_6	UniRef90	UniRef90_A0A8G1TQJ2	Head-tail adaptor protein	NA
UHGV-0097729_6	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0097729_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0097729_7	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0097729_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097729_8	UniRef90	UniRef90_UPI001E346EE7	phage major capsid protein	NA
UHGV-0097729_8	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0097729_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097729_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097729_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097729_9	KOfam	K06904	NA	NA
UHGV-0097729_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0097729_9	UniRef90	UniRef90_A0A316NLC8	HK97 family phage prohead protease	NA
UHGV-0097729_9	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0097729_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0097729_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0097729_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0097729_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0097729_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0097729_10	UniRef90	UniRef90_A0A1F2PE41	Phage portal protein	NA
UHGV-0097729_10	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0097729_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0097729_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0097729_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0097729_10	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0097729_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0097729_11	UniRef90	UniRef90_A0A316NLJ1	Terminase	NA
UHGV-0097729_11	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0097729_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0097729_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0097729_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0097729_11	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0097729_12	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0097729_12	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0097729_12	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0097729_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0097729_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0097729_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0097729_15	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0097729_15	UniRef90	UniRef90_A0A5N7MBM8	Helix-turn-helix transcriptional regulator	NA
UHGV-0097729_15	eggNOG-mapper	420324.KI912039_gene1994	transcriptional regulator	NA
UHGV-0097729_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097729_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097729_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0097729_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097729_16	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0097729_16	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0097729_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097729_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097729_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0097729_18	PHROG	phrog_25385	NA	unknown function
UHGV-0097729_18	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0097729_19	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0097729_19	UniRef90	UniRef90_UPI0013022309	NA	NA
UHGV-0097729_19	eggNOG-mapper	1125712.HMPREF1316_2379	NA	NA
UHGV-0097729_19	Pfam	PF11753	NA	DUF3310
UHGV-0097729_23	PHROG	phrog_22543	NA	unknown function
UHGV-0097729_25	PHROG	phrog_38832	NA	unknown function
UHGV-0097729_27	PHROG	phrog_25732	NA	unknown function
UHGV-0097729_27	Structural annotation	NF011227	NA	NA
UHGV-0097729_28	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0097729_28	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0097729_29	PHROG	phrog_3292	NA	unknown function
UHGV-0097729_29	UniRef90	UniRef90_A0A1V0QCT8	KTSC domain-containing protein	NA
UHGV-0097729_29	eggNOG-mapper	926692.AZYG01000059_gene89	KTSC domain	NA
UHGV-0097729_29	Pfam	PF13619	KTSC domain	KTSC
UHGV-0097729_29	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0097729_29	Structural annotation	PF13619	NA	NA
UHGV-0097729_30	PHROG	phrog_5765	NA	unknown function
UHGV-0097729_30	UniRef90	UniRef90_UPI00115D67B4	BC1881 family protein	NA
UHGV-0097729_30	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0097729_30	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0097729_31	UniRef90	UniRef90_UPI0018AC26C5	Lar family restriction alleviation protein	NA
UHGV-0097729_31	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0097729_31	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0097729_32	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0097729_32	UniRef90	UniRef90_UPI00189D46F4	DNA cytosine methyltransferase	NA
UHGV-0097729_32	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0097729_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0097729_32	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0097729_33	Structural annotation	PF20987	NA	NA
UHGV-0097729_34	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097729_34	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097729_34	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0097729_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0097729_35	PHROG	phrog_9804	NA	unknown function
UHGV-0097729_35	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0097729_35	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0097729_35	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0097729_35	Structural annotation	PF11417	NA	NA
UHGV-0097729_36	PHROG	phrog_16304	NA	unknown function
UHGV-0097729_36	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0097729_36	eggNOG-mapper	1035196.HMPREF9998_01752	NA	NA
UHGV-0097729_36	Pfam	PF19808	NA	DUF6291
UHGV-0097729_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097729_36	Structural annotation	PF19808	NA	NA
UHGV-0097729_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0097729_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097729_37	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-0097729_37	eggNOG-mapper	552398.HMPREF0866_02510	Single-stranded DNA-binding protein	NA
UHGV-0097729_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0097729_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0097729_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097729_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0097729_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0097729_38	PHROG	phrog_4973	NA	unknown function
UHGV-0097729_38	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0097729_38	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0097729_38	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0097729_38	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0097729_39	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097729_39	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-0097729_39	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0097729_39	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097729_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0097729_40	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0097729_40	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0097729_40	Structural annotation	PF05772	NA	NA
UHGV-0097729_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097729_41	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0097729_41	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-0097729_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0097729_41	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0097729_47	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0097729_47	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0097729_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0097729_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097729_51	UniRef90	UniRef90_G9YR83	DNA-binding helix-turn-helix protein	NA
UHGV-0097729_51	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0097729_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097729_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097729_51	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0097729_53	PHROG	phrog_2700	NA	unknown function
UHGV-0097729_53	UniRef90	UniRef90_UPI001A9BA4DF	PH domain-containing protein	NA
UHGV-0097729_53	eggNOG-mapper	457396.CSBG_00774	Bacterial PH domain	NA
UHGV-0097729_53	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0097729_53	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0097729_53	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0097729_55	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0097729_55	PHROG	phrog_8036	NA	unknown function
UHGV-0097729_55	UniRef90	UniRef90_UPI001CBCBA31	DNA damage-inducible protein D	NA
UHGV-0097729_55	eggNOG-mapper	537007.BLAHAN_04376	NA	NA
UHGV-0097729_55	AcrCatalog	cluster_17589	NA	NA
UHGV-0097729_55	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0097729_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0097729_55	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0097729_55	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0097729_55	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0097729_56	KOfam	K14059	int; integrase	NA
UHGV-0097729_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0097729_56	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0097729_56	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0097729_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097729_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097729_56	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0097729_57	KOfam	K07636	phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]	NA
UHGV-0097729_57	PHROG	phrog_857	NA	unknown function
UHGV-0097729_57	UniRef90	UniRef90_A0A8J7VKI9	HAMP domain-containing histidine kinase	NA
UHGV-0097729_57	eggNOG-mapper	478749.BRYFOR_08930	Histidine kinase	NA
UHGV-0097729_57	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0097729_57	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0097729_57	COG	COG0642	Signal transduction histidine kinase	NA