UHGV-0097781

Genome information

Genome length 34,030 bps

CDS count 41

Completeness 96.72% (high-quality)

geNomad score 0.9491

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097781
vOTU ID	vOTU-014584
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_205710
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9491
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.94
Jumbo phage	No

Genome content
Genome length	34,030 bps
GC content	41.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.87%
Average CDS length	749.63 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097781_1	KOfam	K14059	int; integrase	NA
UHGV-0097781_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0097781_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0097781_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0097781_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097781_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0097781_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0097781_2	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0097781_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0097781_2	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0097781_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0097781_3	UniRef90	UniRef90_A0A374MYQ7	XRE family transcriptional regulator	NA
UHGV-0097781_3	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0097781_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097781_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097781_3	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0097781_4	PHROG	phrog_6058	NA	unknown function
UHGV-0097781_4	Structural annotation	NF033787	NA	NA
UHGV-0097781_5	Structural annotation	COG1862	NA	NA
UHGV-0097781_7	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097781_7	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0097781_7	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0097781_7	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0097781_7	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0097781_8	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0097781_8	PHROG	phrog_1499	NA	unknown function
UHGV-0097781_8	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0097781_8	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0097781_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-0097781_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0097781_8	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0097781_10	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097781_10	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0097781_10	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0097781_10	Pfam	PF13479	AAA domain	AAA_24
UHGV-0097781_10	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0097781_11	PHROG	phrog_2698	NA	unknown function
UHGV-0097781_11	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0097781_11	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0097781_11	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0097781_12	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0097781_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097781_12	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0097781_12	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0097781_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0097781_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0097781_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097781_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0097781_12	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0097781_13	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0097781_13	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0097781_13	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0097781_13	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0097781_13	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0097781_13	Pfam	PF13481	AAA domain	AAA_25
UHGV-0097781_13	COG	COG3598	RecA-family ATPase	NA
UHGV-0097781_13	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0097781_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097781_14	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0097781_14	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0097781_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0097781_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097781_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0097781_15	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0097781_17	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-0097781_19	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0097781_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0097781_20	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0097781_20	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0097781_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0097781_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0097781_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0097781_21	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0097781_21	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0097781_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0097781_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0097781_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0097781_22	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0097781_22	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0097781_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0097781_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0097781_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0097781_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0097781_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0097781_23	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0097781_23	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0097781_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0097781_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0097781_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0097781_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0097781_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0097781_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0097781_24	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0097781_24	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0097781_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0097781_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0097781_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0097781_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097781_25	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0097781_25	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0097781_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097781_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097781_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0097781_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097781_26	PHROG	phrog_749	NA	unknown function
UHGV-0097781_26	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0097781_26	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0097781_27	PHROG	phrog_19734	NA	unknown function
UHGV-0097781_27	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0097781_27	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0097781_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0097781_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0097781_28	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0097781_28	Structural annotation	PF05657, TIGR04412	NA	NA
UHGV-0097781_29	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0097781_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0097781_29	Structural annotation	TIGR01725	NA	NA
UHGV-0097781_30	PHROG	phrog_88	major tail protein	tail
UHGV-0097781_30	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0097781_30	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0097781_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0097781_30	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0097781_31	Structural annotation	PF11836	NA	NA
UHGV-0097781_33	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0097781_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0097781_33	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0097781_33	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0097781_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0097781_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0097781_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0097781_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0097781_34	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0097781_34	eggNOG-mapper	272623.L63101	phage tail	NA
UHGV-0097781_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0097781_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0097781_35	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0097781_35	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0097781_35	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0097781_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0097781_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0097781_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0097781_36	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0097781_36	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0097781_38	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0097781_38	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0097781_39	PHROG	phrog_881	holin	lysis
UHGV-0097781_39	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0097781_39	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0097781_39	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0097781_39	Structural annotation	PF16938	NA	NA
UHGV-0097781_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0097781_40	PHROG	phrog_20388	endolysin	lysis
UHGV-0097781_40	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097781_40	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097781_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0097781_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0097781_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0097781_40	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA