UHGV-0097785

Genome information

Genome length 30,487 bps

CDS count 48

Completeness 89.33% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097785
vOTU ID	vOTU-035220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_207799
BioSample	SAMEA3449254
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.6
Jumbo phage	No

Genome content
Genome length	30,487 bps
GC content	43.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.73%
Average CDS length	612.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097785_1	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0097785_1	UniRef90	UniRef90_UPI00037168FB	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0097785_1	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0097785_1	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0097785_3	Structural annotation	PF09393, PF05561, TIGR02126, COG5437	NA	NA
UHGV-0097785_4	UniRef90	UniRef90_A0A2Z4GU91	Minor capsid protein	NA
UHGV-0097785_5	Structural annotation	PF07405, TIGR01563	NA	NA
UHGV-0097785_7	UniRef90	UniRef90_A0A2Z4GUC0	Chitobiase/beta-hexosaminidase	NA
UHGV-0097785_7	eggNOG-mapper	1243664.CAVL020000028_gene58	Fn3 associated	NA
UHGV-0097785_7	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0097785_7	COG	COG2374	Predicted extracellular nuclease	NA
UHGV-0097785_7	Structural annotation	PF05065, PF13620, MF_04119, TIGR04387, TIGR04134, COG4653	NA	NA
UHGV-0097785_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097785_9	UniRef90	UniRef90_A0A2Z4GUI4	Minor capsid protein 2	NA
UHGV-0097785_9	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-0097785_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097785_9	COG	COG2369	NA	NA
UHGV-0097785_9	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0097785_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097785_10	UniRef90	UniRef90_A0A2Z4GUT7	Portal protein	NA
UHGV-0097785_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0097785_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097785_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097785_11	UniRef90	UniRef90_A0A2Z4GUK2	Terminase large subunit	NA
UHGV-0097785_11	eggNOG-mapper	272626.lin0105	Terminase RNAseH like domain	NA
UHGV-0097785_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0097785_11	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0097785_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097785_11	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0097785_12	UniRef90	UniRef90_A0A3E2U5Z1	Helix-turn-helix domain-containing protein	NA
UHGV-0097785_12	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0097785_12	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-0097785_12	Structural annotation	PF02796, NF040785	NA	NA
UHGV-0097785_14	eggNOG-mapper	742733.HMPREF9469_02880	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0097785_14	COG	COG2369	NA	NA
UHGV-0097785_16	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0097785_16	UniRef90	UniRef90_A0A7C7AHY6	NA	NA
UHGV-0097785_16	eggNOG-mapper	203119.Cthe_2469	phage transcriptional regulator, RinA family	NA
UHGV-0097785_16	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0097785_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0097785_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0097785_21	UniRef90	UniRef90_UPI001D07F2A4	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0097785_21	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0097785_21	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0097785_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0097785_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0097785_21	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0097785_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0097785_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097785_22	UniRef90	UniRef90_A0A2V2GHM3	Single-stranded DNA-binding protein	NA
UHGV-0097785_22	eggNOG-mapper	1286171.EAL2_c22110	Single-stranded DNA-binding protein	NA
UHGV-0097785_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0097785_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0097785_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097785_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0097785_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0097785_23	PHROG	phrog_9804	NA	unknown function
UHGV-0097785_23	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0097785_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0097785_23	Structural annotation	PF11417	NA	NA
UHGV-0097785_24	PHROG	phrog_3136	NA	unknown function
UHGV-0097785_24	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0097785_24	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0097785_24	Pfam	PF04266	ASCH domain	ASCH
UHGV-0097785_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0097785_24	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0097785_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0097785_25	UniRef90	UniRef90_UPI001D04D0BE	NA	NA
UHGV-0097785_25	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-0097785_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0097785_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097785_25	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0097785_26	PHROG	phrog_4973	NA	unknown function
UHGV-0097785_26	UniRef90	UniRef90_A0A1M5S5U4	Helix-turn-helix domain-containing protein	NA
UHGV-0097785_26	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0097785_26	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0097785_28	PHROG	phrog_14970	NA	unknown function
UHGV-0097785_28	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0097785_28	eggNOG-mapper	1122981.AUME01000026_gene555	double-strand break repair protein	NA
UHGV-0097785_28	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0097785_28	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0097785_28	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0097785_29	PHROG	phrog_9562	NA	unknown function
UHGV-0097785_29	UniRef90	UniRef90_UPI001C3D9077	NA	NA
UHGV-0097785_29	eggNOG-mapper	272563.CD630_29960	Pentapeptide repeat protein	NA
UHGV-0097785_29	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0097785_29	Pfam	PF19062	NA	DUF5758
UHGV-0097785_29	COG	COG1357	NA	NA
UHGV-0097785_29	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0097785_30	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0097785_30	UniRef90	UniRef90_A0A1A8Y0W1	NA	NA
UHGV-0097785_30	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0097785_30	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0097785_30	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0097785_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0097785_33	UniRef90	UniRef90_A0A2A4DTX0	Helix-turn-helix transcriptional regulator	NA
UHGV-0097785_33	eggNOG-mapper	768486.EHR_02755	Helix-turn-helix XRE-family like proteins	NA
UHGV-0097785_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097785_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0097785_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0097785_34	KOfam	K20342	comR; HTH-type transcriptional regulator, regulator for ComX	NA
UHGV-0097785_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0097785_34	UniRef90	UniRef90_A0A316PCK8	XRE family transcriptional regulator	NA
UHGV-0097785_34	eggNOG-mapper	1450694.BTS2_3368	Helix-turn-helix XRE-family like proteins	NA
UHGV-0097785_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097785_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0097785_41	PHROG	phrog_2428	NA	unknown function
UHGV-0097785_41	UniRef90	UniRef90_UPI0007E0147E	ABC transporter ATPase	NA
UHGV-0097785_41	eggNOG-mapper	632245.CLP_1645	NA	NA
UHGV-0097785_41	dbAPIS	APIS024	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	NA
UHGV-0097785_44	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0097785_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0097785_44	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0097785_45	Structural annotation	PF06013, MF_00683, NF003844, COG4842	NA	NA
UHGV-0097785_46	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0097785_48	UniRef90	UniRef90_UPI000C59E9CB	YigZ family protein	NA
UHGV-0097785_48	eggNOG-mapper	1504823.CCMM01000011_gene1414	NA	NA
UHGV-0097785_48	Pfam	PF01205	NA	UPF0029
UHGV-0097785_48	COG	COG1739	Putative translation regulator, IMPACT (imprinted ancient) protein family	NA