UHGV-0097826

Genome information

Genome length 38,571 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097826
vOTU ID	vOTU-014127
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_213180
BioSample	SAMEA3541582
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.48
Jumbo phage	No

Genome content
Genome length	38,571 bps
GC content	39.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.57%
Average CDS length	667.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097826_1	PHROG	phrog_199	holin	lysis
UHGV-0097826_1	UniRef90	UniRef90_A0A1Y4LTY3	Holin	NA
UHGV-0097826_1	eggNOG-mapper	908340.HMPREF9406_0810	Bacteriophage holin family	NA
UHGV-0097826_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097826_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097826_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097826_2	PHROG	phrog_27545	NA	unknown function
UHGV-0097826_2	eggNOG-mapper	478749.BRYFOR_07638	NA	NA
UHGV-0097826_3	KOfam	K14059	int; integrase	NA
UHGV-0097826_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0097826_3	UniRef90	UniRef90_A0A3E3DYG7	Site-specific integrase	NA
UHGV-0097826_3	eggNOG-mapper	1235796.C815_00904	Belongs to the 'phage' integrase family	NA
UHGV-0097826_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0097826_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097826_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097826_3	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0097826_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0097826_7	PHROG	phrog_24267	NA	unknown function
UHGV-0097826_7	UniRef90	UniRef90_K4F7V9	Putative structural protein	NA
UHGV-0097826_7	eggNOG-mapper	1141137.K4F7V9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0097826_7	Structural annotation	COG4675	NA	NA
UHGV-0097826_8	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0097826_8	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0097826_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0097826_9	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0097826_9	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0097826_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0097826_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0097826_10	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0097826_10	Structural annotation	PF10651	NA	NA
UHGV-0097826_11	PHROG	phrog_19695	NA	unknown function
UHGV-0097826_11	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0097826_11	Structural annotation	PF19714	NA	NA
UHGV-0097826_13	PHROG	phrog_8781	endolysin	lysis
UHGV-0097826_13	UniRef90	UniRef90_A0A3A6D9Z4	Peptidase C51 domain-containing protein	NA
UHGV-0097826_13	eggNOG-mapper	552396.HMPREF0863_01651	lysozyme activity	NA
UHGV-0097826_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0097826_13	Structural annotation	PF05382, COG0791	NA	NA
UHGV-0097826_14	PHROG	phrog_13289	tail protein	tail
UHGV-0097826_14	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0097826_14	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0097826_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0097826_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0097826_14	COG	COG4926	Phage-related protein	NA
UHGV-0097826_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0097826_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0097826_15	UniRef90	UniRef90_A0A414S2W8	Phage tail protein	NA
UHGV-0097826_15	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0097826_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0097826_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0097826_16	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0097826_16	UniRef90	UniRef90_UPI001BC868E1	tape measure protein	NA
UHGV-0097826_16	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0097826_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0097826_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0097826_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0097826_17	PHROG	phrog_706	NA	unknown function
UHGV-0097826_17	UniRef90	UniRef90_A0A1M6B1I0	Bacteriophage Gp15 protein	NA
UHGV-0097826_17	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0097826_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0097826_17	Structural annotation	PF06854	NA	NA
UHGV-0097826_18	Structural annotation	PF20378	NA	NA
UHGV-0097826_19	PHROG	phrog_820	major tail protein	tail
UHGV-0097826_19	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0097826_19	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0097826_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0097826_20	PHROG	phrog_3266	tail completion	connector
UHGV-0097826_20	eggNOG-mapper	663278.Ethha_0492	NA	NA
UHGV-0097826_20	Structural annotation	PF12691	NA	NA
UHGV-0097826_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0097826_21	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0097826_21	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0097826_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0097826_21	Structural annotation	PF11114	NA	NA
UHGV-0097826_22	PHROG	phrog_3366	NA	unknown function
UHGV-0097826_22	Pfam	PF20536	NA	DUF6751
UHGV-0097826_22	Structural annotation	PF20536	NA	NA
UHGV-0097826_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097826_23	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0097826_24	UniRef90	UniRef90_UPI00195D52EA	head fiber protein	NA
UHGV-0097826_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0097826_25	UniRef90	UniRef90_UPI001C3B6033	Phage major capsid protein	NA
UHGV-0097826_25	eggNOG-mapper	1449050.JNLE01000003_gene3889	Phage capsid family	NA
UHGV-0097826_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0097826_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0097826_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0097826_25	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0097826_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0097826_26	UniRef90	UniRef90_UPI001EEEEE4A	phage scaffolding protein	NA
UHGV-0097826_26	eggNOG-mapper	1123309.AQYB01000018_gene809	Phage minor structural protein GP20	NA
UHGV-0097826_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097826_28	UniRef90	UniRef90_UPI001C3BD1F2	Phage minor capsid protein	NA
UHGV-0097826_28	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0097826_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097826_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0097826_28	COG	COG2369	NA	NA
UHGV-0097826_28	Structural annotation	PF06152	NA	NA
UHGV-0097826_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097826_29	UniRef90	UniRef90_A0A8E3MVT4	Phage portal protein	NA
UHGV-0097826_29	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-0097826_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097826_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097826_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097826_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097826_30	UniRef90	UniRef90_A0A8E3MVD8	PBSX family phage terminase large subunit	NA
UHGV-0097826_30	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0097826_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097826_30	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097826_31	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0097826_31	UniRef90	UniRef90_UPI001F0D9F9C	phage terminase small subunit	NA
UHGV-0097826_31	eggNOG-mapper	1232449.BAHV02000008_gene626	DNA packaging	NA
UHGV-0097826_31	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0097826_31	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0097826_31	COG	COG5484	NA	NA
UHGV-0097826_31	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0097826_32	Structural annotation	TIGR01637	NA	NA
UHGV-0097826_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0097826_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097826_38	UniRef90	UniRef90_A0A3D4L3X9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097826_38	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-0097826_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0097826_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097826_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0097826_40	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0097826_40	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0097826_40	UniRef90	UniRef90_A0A1Y4LY87	DNA primase	NA
UHGV-0097826_40	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0097826_40	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0097826_40	Pfam	PF13481	AAA domain	AAA_25
UHGV-0097826_40	COG	COG3598	RecA-family ATPase	NA
UHGV-0097826_40	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0097826_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0097826_41	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0097826_41	UniRef90	UniRef90_UPI0008F834DE	ParB/RepB/Spo0J family partition protein	NA
UHGV-0097826_41	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0097826_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0097826_41	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0097826_41	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0097826_41	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0097826_42	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0097826_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0097826_42	UniRef90	UniRef90_A0A1Y4LTU1	DEAD/DEAH box helicase	NA
UHGV-0097826_42	eggNOG-mapper	552396.HMPREF0863_02436	helicase superfamily c-terminal domain	NA
UHGV-0097826_42	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0097826_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0097826_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0097826_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0097826_42	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0097826_43	PHROG	phrog_2698	NA	unknown function
UHGV-0097826_43	UniRef90	UniRef90_A0A5F0K1Y3	NA	NA
UHGV-0097826_43	eggNOG-mapper	1235798.C817_03500	NA	NA
UHGV-0097826_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097826_44	UniRef90	UniRef90_UPI0009337475	ATP-binding protein	NA
UHGV-0097826_44	eggNOG-mapper	999413.HMPREF1094_00235	AAA domain	NA
UHGV-0097826_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0097826_44	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0097826_45	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0097826_45	PHROG	phrog_1499	NA	unknown function
UHGV-0097826_45	UniRef90	UniRef90_A0A1Y4LTU2	Chromosome segregation protein SMC	NA
UHGV-0097826_45	eggNOG-mapper	552396.HMPREF0863_02439	AAA ATPase domain	NA
UHGV-0097826_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0097826_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0097826_45	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0097826_48	UniRef90	UniRef90_A0A3E3E5C1	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0097826_48	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0097826_49	UniRef90	UniRef90_A0A374RH67	NA	NA
UHGV-0097826_49	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0097826_49	Pfam	PF05339	NA	DUF739
UHGV-0097826_49	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0097826_49	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0097826_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0097826_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0097826_50	UniRef90	UniRef90_D4JEI4	Predicted transcriptional regulator	NA
UHGV-0097826_50	eggNOG-mapper	706433.HMPREF9430_01295	NA	NA
UHGV-0097826_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097826_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0097826_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0097826_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0097826_51	PHROG	phrog_1847	NA	unknown function
UHGV-0097826_51	UniRef90	UniRef90_U2PS93	T5orf172 domain-containing protein	NA
UHGV-0097826_51	eggNOG-mapper	762968.HMPREF9441_00590	seryl-tRNA aminoacylation	NA
UHGV-0097826_51	Pfam	PF13250	NA	DUF4041
UHGV-0097826_51	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0097826_51	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0097826_51	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0097826_52	KOfam	K14059	int; integrase	NA
UHGV-0097826_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0097826_52	UniRef90	UniRef90_A0A3N0I0H4	Site-specific integrase	NA
UHGV-0097826_52	eggNOG-mapper	97138.C820_02097	Belongs to the 'phage' integrase family	NA
UHGV-0097826_52	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0097826_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097826_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097826_52	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0097826_53	KOfam	K07133	NA	NA
UHGV-0097826_53	UniRef90	UniRef90_UPI001C6FF002	AAA family ATPase	NA
UHGV-0097826_53	eggNOG-mapper	1226322.HMPREF1545_00501	NA	NA
UHGV-0097826_53	Pfam	PF13173	AAA domain	AAA_14
UHGV-0097826_53	COG	COG1373	Predicted ATPase, AAA+ superfamily	NA