UHGV-0097895

Genome information

vOTU vOTU-019160

Genome length 31,358 bps

CDS count 35

Completeness 81.49% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097895
vOTU ID	vOTU-019160
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229215
BioSample	SAMEA3708689
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.42
Jumbo phage	No

Genome content
Genome length	31,358 bps
GC content	39.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	87.99%
Average CDS length	794.14 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097895_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0097895_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0097895_1	UniRef90	UniRef90_A7B7V4	TnpX site-specific recombinase	NA
UHGV-0097895_1	eggNOG-mapper	1121864.OMO_01631	NA	NA
UHGV-0097895_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0097895_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0097895_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0097895_1	Pfam	PF14287	NA	DUF4368
UHGV-0097895_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0097895_1	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0097895_2	PHROG	phrog_398	NA	unknown function
UHGV-0097895_2	UniRef90	UniRef90_UPI0001F01BA5	putative HNHc nuclease	NA
UHGV-0097895_2	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0097895_2	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0097895_3	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097895_3	UniRef90	UniRef90_A0A5B3G7W7	NA	NA
UHGV-0097895_3	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0097895_3	Pfam	PF06356	NA	DUF1064
UHGV-0097895_3	Structural annotation	PF06356	NA	NA
UHGV-0097895_4	PHROG	phrog_16304	NA	unknown function
UHGV-0097895_4	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0097895_4	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0097895_4	Pfam	PF19808	NA	DUF6291
UHGV-0097895_4	Structural annotation	PF19808	NA	NA
UHGV-0097895_5	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-0097895_8	PHROG	phrog_30258	NA	unknown function
UHGV-0097895_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097895_9	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0097895_9	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0097895_9	Structural annotation	PF02996	NA	NA
UHGV-0097895_10	PHROG	phrog_872	NA	unknown function
UHGV-0097895_10	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0097895_10	dbAPIS	APIS052	NA	NA
UHGV-0097895_11	PHROG	phrog_918	NA	unknown function
UHGV-0097895_11	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0097895_11	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0097895_11	Pfam	PF19791	NA	DUF6275
UHGV-0097895_11	Structural annotation	PF19791	NA	NA
UHGV-0097895_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0097895_12	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0097895_12	UniRef90	UniRef90_A0A417V811	Terminase small subunit	NA
UHGV-0097895_12	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0097895_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0097895_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0097895_12	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0097895_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097895_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0097895_13	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0097895_13	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0097895_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097895_13	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0097895_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0097895_14	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0097895_14	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0097895_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0097895_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0097895_15	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0097895_15	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0097895_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0097895_15	COG	COG2369	NA	NA
UHGV-0097895_15	Structural annotation	PF06152	NA	NA
UHGV-0097895_17	Structural annotation	PF20873	NA	NA
UHGV-0097895_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0097895_18	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0097895_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0097895_19	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0097895_19	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0097895_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0097895_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0097895_20	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0097895_21	PHROG	phrog_8710	NA	unknown function
UHGV-0097895_21	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0097895_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0097895_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0097895_22	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0097895_23	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0097895_23	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0097895_23	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0097895_23	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0097895_23	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0097895_24	PHROG	phrog_820	major tail protein	tail
UHGV-0097895_24	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0097895_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0097895_25	PHROG	phrog_8300	NA	unknown function
UHGV-0097895_25	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0097895_25	Structural annotation	PF06854	NA	NA
UHGV-0097895_26	PHROG	phrog_8355	NA	unknown function
UHGV-0097895_26	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0097895_26	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0097895_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0097895_27	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0097895_27	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0097895_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0097895_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0097895_28	PHROG	phrog_1194	NA	unknown function
UHGV-0097895_28	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0097895_28	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0097895_29	PHROG	phrog_1401	NA	unknown function
UHGV-0097895_29	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0097895_29	Structural annotation	PF07761	NA	NA
UHGV-0097895_30	PHROG	phrog_16267	NA	unknown function
UHGV-0097895_30	UniRef90	UniRef90_UPI00156FBBAC	tail fiber domain-containing protein	NA
UHGV-0097895_30	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0097895_30	COG	COG4926	Phage-related protein	NA
UHGV-0097895_31	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0097895_31	eggNOG-mapper	1345695.CLSA_c22960	NA	NA
UHGV-0097895_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0097895_31	COG	COG4926	Phage-related protein	NA
UHGV-0097895_32	PHROG	phrog_2566	NA	unknown function
UHGV-0097895_32	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0097895_32	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0097895_33	PHROG	phrog_199	holin	lysis
UHGV-0097895_33	UniRef90	UniRef90_A0A417V866	Holin	NA
UHGV-0097895_33	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0097895_33	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097895_33	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097895_33	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0097895_33	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097895_34	PHROG	phrog_21357	endolysin	lysis
UHGV-0097895_34	UniRef90	UniRef90_A0A417V8P8	CHAP domain-containing protein	NA
UHGV-0097895_34	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0097895_34	Pfam	PF05257	CHAP domain	CHAP
UHGV-0097895_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0097895_34	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0097895_35	KOfam	K14059	int; integrase	NA
UHGV-0097895_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0097895_35	UniRef90	UniRef90_B0NZG9	Site-specific recombinase, phage integrase family	NA
UHGV-0097895_35	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0097895_35	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0097895_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0097895_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0097895_35	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA