UHGV-0097902

Genome information

Genome length 34,440 bps

CDS count 49

Completeness 61.59% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0097902
vOTU ID	vOTU-032177
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229206
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.06
Jumbo phage	No

Genome content
Genome length	34,440 bps
GC content	34.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.32%
Average CDS length	651.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0097902_1	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0097902_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0097902_2	PHROG	phrog_9188	NA	unknown function
UHGV-0097902_2	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0097902_2	eggNOG-mapper	565664.EFXG_01806	zinc-ribbon domain	NA
UHGV-0097902_2	Structural annotation	PF11023, MF_01502, NF002796	NA	NA
UHGV-0097902_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0097902_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0097902_3	UniRef90	UniRef90_R2SET7	HTH cro/C1-type domain-containing protein	NA
UHGV-0097902_3	eggNOG-mapper	1158607.UAU_05144	sequence-specific DNA binding	NA
UHGV-0097902_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0097902_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0097902_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0097902_4	UniRef90	UniRef90_UPI001D060346	helix-turn-helix domain-containing protein	NA
UHGV-0097902_4	eggNOG-mapper	1415774.U728_1714	Helix-turn-helix domain	NA
UHGV-0097902_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0097902_5	Structural annotation	NF040595	NA	NA
UHGV-0097902_7	PHROG	phrog_674	NA	unknown function
UHGV-0097902_7	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-0097902_7	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0097902_7	Pfam	PF07083	NA	DUF1351
UHGV-0097902_7	Structural annotation	PF07083	NA	NA
UHGV-0097902_8	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0097902_8	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0097902_8	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0097902_8	Pfam	PF03837	RecT family	RecT
UHGV-0097902_8	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0097902_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0097902_9	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0097902_9	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0097902_9	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0097902_9	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0097902_9	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0097902_9	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0097902_9	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0097902_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0097902_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0097902_10	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-0097902_10	eggNOG-mapper	1280680.AUJU01000003_gene3256	Single-strand binding protein family	NA
UHGV-0097902_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0097902_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0097902_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0097902_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0097902_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0097902_11	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0097902_11	UniRef90	UniRef90_A0A3D4VRX2	NA	NA
UHGV-0097902_11	eggNOG-mapper	742727.HMPREF9447_02572	NA	NA
UHGV-0097902_11	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0097902_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0097902_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0097902_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0097902_13	UniRef90	UniRef90_UPI0018D632B2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0097902_13	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-0097902_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0097902_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0097902_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0097902_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0097902_16	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-0097902_16	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0097902_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0097902_16	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0097902_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0097902_17	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0097902_17	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0097902_17	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0097902_17	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0097902_17	Structural annotation	PF07141	NA	NA
UHGV-0097902_18	PHROG	phrog_4691	excisionase	integration and excision
UHGV-0097902_18	UniRef90	UniRef90_UPI001E59F5FA	helix-turn-helix domain-containing protein	NA
UHGV-0097902_18	eggNOG-mapper	1347392.CCEZ01000005_gene1255	Helix-turn-helix domain	NA
UHGV-0097902_18	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0097902_18	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0097902_18	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0097902_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0097902_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0097902_19	UniRef90	UniRef90_U1Y2Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0097902_19	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-0097902_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0097902_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0097902_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0097902_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0097902_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0097902_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0097902_20	UniRef90	UniRef90_UPI00164E78B1	phage portal protein	NA
UHGV-0097902_20	eggNOG-mapper	887325.HMPREF0381_0085	Phage portal protein, SPP1 family	NA
UHGV-0097902_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0097902_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0097902_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0097902_21	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0097902_21	UniRef90	UniRef90_E6LJE9	Phage protein F-like protein	NA
UHGV-0097902_21	eggNOG-mapper	887325.HMPREF0381_0084	Phage Mu protein F like protein	NA
UHGV-0097902_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0097902_21	COG	COG2369	NA	NA
UHGV-0097902_23	PHROG	phrog_3675	NA	unknown function
UHGV-0097902_23	UniRef90	UniRef90_R6NR22	YjcQ protein	NA
UHGV-0097902_23	eggNOG-mapper	936573.HMPREF1147_1325	YjcQ protein	NA
UHGV-0097902_23	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0097902_23	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0097902_24	UniRef90	UniRef90_UPI000ABFAD32	CopG family transcriptional regulator	NA
UHGV-0097902_24	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0097902_24	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0097902_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0097902_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0097902_26	UniRef90	UniRef90_A0A7X9GQB4	Oxidoreductase	NA
UHGV-0097902_26	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0097902_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0097902_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0097902_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0097902_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0097902_27	PHROG	phrog_774	NA	unknown function
UHGV-0097902_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0097902_28	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0097902_28	Pfam	PF14265	NA	DUF4355
UHGV-0097902_28	Structural annotation	PF14265	NA	NA
UHGV-0097902_29	PHROG	phrog_909	major head protein	head and packaging
UHGV-0097902_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0097902_30	UniRef90	UniRef90_R7H6N6	Phage major capsid protein E	NA
UHGV-0097902_30	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0097902_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0097902_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0097902_33	PHROG	phrog_222	tail protein	tail
UHGV-0097902_33	UniRef90	UniRef90_A0A6G9L6L4	Tail completion protein	NA
UHGV-0097902_33	eggNOG-mapper	1121091.AUMP01000032_gene3102	NA	NA
UHGV-0097902_34	PHROG	phrog_1661	NA	unknown function
UHGV-0097902_34	eggNOG-mapper	1484479.DI14_04750	NA	NA
UHGV-0097902_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0097902_35	PHROG	phrog_1232	NA	unknown function
UHGV-0097902_35	eggNOG-mapper	525919.Apre_0845	NA	NA
UHGV-0097902_35	Structural annotation	PF08873	NA	NA
UHGV-0097902_36	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0097902_36	UniRef90	UniRef90_UPI00189D3BF5	NA	NA
UHGV-0097902_36	eggNOG-mapper	1307436.PBF_04380	NA	NA
UHGV-0097902_36	Pfam	PF11863	NA	DUF3383
UHGV-0097902_36	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0097902_37	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0097902_37	UniRef90	UniRef90_A0A2K2TVV7	NA	NA
UHGV-0097902_37	eggNOG-mapper	1236976.JCM16418_801	NA	NA
UHGV-0097902_37	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0097902_37	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0097902_38	PHROG	phrog_1778	NA	unknown function
UHGV-0097902_38	Structural annotation	PF16462	NA	NA
UHGV-0097902_39	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0097902_39	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0097902_39	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0097902_39	COG	COG5412	Phage-related protein	NA
UHGV-0097902_40	PHROG	phrog_1517	endolysin	lysis
UHGV-0097902_40	UniRef90	UniRef90_A0A544TWG6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0097902_40	eggNOG-mapper	887325.HMPREF0381_0071	positive regulation of growth rate	NA
UHGV-0097902_40	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0097902_40	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0097902_40	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0097902_41	PHROG	phrog_1264	NA	unknown function
UHGV-0097902_41	eggNOG-mapper	1230341.MJ3_13674	NA	NA
UHGV-0097902_42	KOfam	K19224	lytE, cwlF; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]	NA
UHGV-0097902_42	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0097902_42	eggNOG-mapper	887325.HMPREF0381_0069	NA	NA
UHGV-0097902_42	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0097902_43	Structural annotation	PF18352	NA	NA
UHGV-0097902_44	PHROG	phrog_120	baseplate protein	tail
UHGV-0097902_44	UniRef90	UniRef90_UPI000C256A04	NA	NA
UHGV-0097902_44	eggNOG-mapper	1121091.AUMP01000032_gene3114	NA	NA
UHGV-0097902_44	Pfam	PF10934	NA	DUF2634
UHGV-0097902_44	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0097902_45	PHROG	phrog_6	baseplate protein	tail
UHGV-0097902_45	UniRef90	UniRef90_A0A355JCM0	Baseplate_J domain-containing protein	NA
UHGV-0097902_45	eggNOG-mapper	887325.HMPREF0381_0066	Baseplate J-like protein	NA
UHGV-0097902_45	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0097902_45	COG	COG3299	NA	NA
UHGV-0097902_45	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0097902_46	PHROG	phrog_1160	baseplate protein	tail
UHGV-0097902_46	UniRef90	UniRef90_UPI001C209634	NA	NA
UHGV-0097902_46	eggNOG-mapper	1449338.JQLU01000005_gene3783	NA	NA
UHGV-0097902_46	Pfam	PF11041	NA	DUF2612
UHGV-0097902_46	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0097902_47	PHROG	phrog_2126	tail fiber protein	tail
UHGV-0097902_47	eggNOG-mapper	1449338.JQLU01000005_gene3784	NA	NA
UHGV-0097902_47	Structural annotation	TIGR03805	NA	NA
UHGV-0097902_48	PHROG	phrog_199	holin	lysis
UHGV-0097902_48	UniRef90	UniRef90_A0A414P9N2	Holin	NA
UHGV-0097902_48	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0097902_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0097902_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0097902_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0097902_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0097902_49	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0097902_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA