UHGV-0098022

Genome information

Genome length 34,598 bps

CDS count 44

Completeness 76.54% (medium-quality)

geNomad score 0.9305

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098022
vOTU ID	vOTU-026533
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201327
BioSample	SAMEA3449149
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9305
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.68
Jumbo phage	No

Genome content
Genome length	34,598 bps
GC content	31.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.05%
Average CDS length	719.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098022_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0098022_3	PHROG	phrog_5867	endolysin	lysis
UHGV-0098022_3	UniRef90	UniRef90_A0A292SUJ5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098022_3	eggNOG-mapper	1255043.TVNIR_1739	Chitinase class I	NA
UHGV-0098022_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0098022_3	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0098022_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0098022_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098022_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0098022_4	UniRef90	UniRef90_A0A292SUF1	PBSX family phage terminase large subunit	NA
UHGV-0098022_4	eggNOG-mapper	1267535.KB906767_gene2463	phage Terminase large subunit	NA
UHGV-0098022_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098022_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098022_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098022_4	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098022_5	PHROG	phrog_1863	NA	unknown function
UHGV-0098022_5	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0098022_5	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0098022_6	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0098022_6	UniRef90	UniRef90_A0A843HT70	NA	NA
UHGV-0098022_6	eggNOG-mapper	394.NGR_a02950	NA	NA
UHGV-0098022_6	Pfam	PF07087	NA	DUF1353
UHGV-0098022_6	Structural annotation	PF07087	NA	NA
UHGV-0098022_12	Structural annotation	PF11039, MF_02210, NF008072, COG1247	NA	NA
UHGV-0098022_13	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0098022_14	UniRef90	UniRef90_A0A395VAC5	NA	NA
UHGV-0098022_14	eggNOG-mapper	1280688.AUJB01000004_gene133	NA	NA
UHGV-0098022_14	Pfam	PF12686	NA	DUF3800
UHGV-0098022_15	Structural annotation	PF20387	NA	NA
UHGV-0098022_17	PHROG	phrog_24894	NA	unknown function
UHGV-0098022_17	Structural annotation	COG4288	NA	NA
UHGV-0098022_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0098022_18	eggNOG-mapper	68199.JNZO01000025_gene5828	P22 coat protein-protein 5 domain protein	NA
UHGV-0098022_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098022_21	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0098022_21	UniRef90	UniRef90_K2EAN5	Portal protein	NA
UHGV-0098022_21	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0098022_23	Structural annotation	PF17574	NA	NA
UHGV-0098022_27	eggNOG-mapper	857087.Metme_1985	NA	NA
UHGV-0098022_27	Pfam	PF21781	NA	DUF6876
UHGV-0098022_27	Structural annotation	PF21781	NA	NA
UHGV-0098022_28	PHROG	phrog_16683	NA	unknown function
UHGV-0098022_28	UniRef90	UniRef90_UPI0013EAA9B9	amidoligase family protein	NA
UHGV-0098022_28	eggNOG-mapper	693746.OBV_34590	Putative amidoligase enzyme	NA
UHGV-0098022_28	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0098022_28	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0098022_29	PHROG	phrog_25883	NA	unknown function
UHGV-0098022_29	UniRef90	UniRef90_A0A1T4SYF7	Glutamine amidotransferases class-II	NA
UHGV-0098022_29	COG	COG0449	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	NA
UHGV-0098022_29	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-0098022_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098022_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098022_34	UniRef90	UniRef90_A0A292SUM5	Peptidase_S24 domain-containing protein	NA
UHGV-0098022_34	eggNOG-mapper	644076.SCH4B_1728	transcriptional regulator	NA
UHGV-0098022_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098022_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0098022_34	Structural annotation	PF00717, PF20432, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0098022_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098022_36	UniRef90	UniRef90_A0A292SUI4	YqaJ domain-containing protein	NA
UHGV-0098022_36	eggNOG-mapper	391009.Tmel_1473	YqaJ-like viral recombinase domain	NA
UHGV-0098022_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0098022_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0098022_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0098022_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0098022_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0098022_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098022_38	UniRef90	UniRef90_A0A292SUJ4	Recombinase RecT	NA
UHGV-0098022_38	eggNOG-mapper	1150474.JQJI01000006_gene829	RecT family	NA
UHGV-0098022_38	Pfam	PF03837	RecT family	RecT
UHGV-0098022_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0098022_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0098022_38	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0098022_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098022_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098022_39	Structural annotation	PF00436, MF_00984, NF005241, COG2965	NA	NA
UHGV-0098022_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0098022_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0098022_40	UniRef90	UniRef90_A0A292SUW2	DNA helicase	NA
UHGV-0098022_40	eggNOG-mapper	1215915.BN193_04510	Participates in initiation and elongation during chromosome replication	NA
UHGV-0098022_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0098022_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0098022_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0098022_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0098022_41	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0098022_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0098022_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0098022_43	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0098022_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0098022_43	UniRef90	UniRef90_A0A843HLZ3	Site-specific integrase	NA
UHGV-0098022_43	eggNOG-mapper	1379858.N508_01690	Phage integrase family	NA
UHGV-0098022_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098022_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098022_43	Structural annotation	PF00589, PF20172, MF_01808, TIGR02224, COG4974	NA	NA