UHGV-0098239

Genome information

Genome length 29,899 bps

CDS count 42

Completeness 74.08% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098239
vOTU ID	vOTU-042372
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_212496
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.49
Jumbo phage	No

Genome content
Genome length	29,899 bps
GC content	53.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	95.13%
Average CDS length	683.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098239_1	KOfam	K14059	int; integrase	NA
UHGV-0098239_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0098239_1	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-0098239_1	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0098239_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098239_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098239_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0098239_2	eggNOG-mapper	445972.ANACOL_01856	NA	NA
UHGV-0098239_2	Structural annotation	PF07718, PF02883, NF007398, COG3121	NA	NA
UHGV-0098239_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098239_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098239_3	UniRef90	UniRef90_D4LDS3	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0098239_3	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0098239_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098239_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098239_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0098239_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0098239_4	UniRef90	UniRef90_UPI000FDA89FE	helix-turn-helix domain-containing protein	NA
UHGV-0098239_4	eggNOG-mapper	1410650.JHWL01000003_gene2856	NA	NA
UHGV-0098239_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0098239_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098239_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098239_5	UniRef90	UniRef90_A0A3D1HE27	HTH cro/C1-type domain-containing protein	NA
UHGV-0098239_5	eggNOG-mapper	762550.LEGAS_0229	Helix-turn-helix domain	NA
UHGV-0098239_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098239_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098239_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0098239_8	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098239_8	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0098239_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0098239_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0098239_10	UniRef90	UniRef90_UPI001A9AFC23	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0098239_10	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0098239_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0098239_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0098239_10	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0098239_11	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0098239_11	PHROG	phrog_1499	NA	unknown function
UHGV-0098239_11	UniRef90	UniRef90_A0A3C1H1X1	Chromosome segregation protein SMC	NA
UHGV-0098239_11	eggNOG-mapper	1262914.BN533_01950	AAA domain	NA
UHGV-0098239_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0098239_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098239_11	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0098239_12	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098239_12	UniRef90	UniRef90_UPI00048D6C48	ATP-binding protein	NA
UHGV-0098239_12	eggNOG-mapper	1262914.BN533_01949	AAA domain	NA
UHGV-0098239_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-0098239_12	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0098239_13	PHROG	phrog_2698	NA	unknown function
UHGV-0098239_13	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0098239_13	eggNOG-mapper	294382.Q5YA95_9CAUD	NA	NA
UHGV-0098239_13	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0098239_14	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0098239_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0098239_14	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0098239_14	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0098239_14	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0098239_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0098239_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0098239_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0098239_14	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0098239_15	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0098239_15	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0098239_15	UniRef90	UniRef90_A0A1C6E992	Regulatory protein repA	NA
UHGV-0098239_15	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0098239_15	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0098239_15	Pfam	PF13481	AAA domain	AAA_25
UHGV-0098239_15	COG	COG3598	RecA-family ATPase	NA
UHGV-0098239_15	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0098239_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0098239_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098239_17	UniRef90	UniRef90_UPI000F52952D	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0098239_17	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0098239_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0098239_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098239_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0098239_18	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-0098239_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0098239_21	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0098239_21	eggNOG-mapper	1203606.HMPREF1526_01892	NA	NA
UHGV-0098239_21	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0098239_21	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0098239_23	PHROG	phrog_8684	NA	unknown function
UHGV-0098239_23	UniRef90	UniRef90_A0A1C5PC30	YopX protein	NA
UHGV-0098239_23	eggNOG-mapper	563008.HMPREF0665_02419	YopX protein	NA
UHGV-0098239_23	Pfam	PF09643	YopX protein	YopX
UHGV-0098239_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0098239_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0098239_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098239_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0098239_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0098239_24	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-0098239_26	PHROG	phrog_2412	NA	unknown function
UHGV-0098239_26	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0098239_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098239_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0098239_27	UniRef90	UniRef90_A0A1C6FMV1	Phage terminase, large subunit, PBSX family	NA
UHGV-0098239_27	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0098239_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0098239_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098239_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098239_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0098239_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098239_28	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-0098239_28	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0098239_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098239_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098239_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098239_29	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0098239_29	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0098239_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098239_29	COG	COG2369	NA	NA
UHGV-0098239_29	Structural annotation	PF06152	NA	NA
UHGV-0098239_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0098239_31	eggNOG-mapper	986075.CathTA2_2461	NA	NA
UHGV-0098239_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-0098239_32	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0098239_32	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0098239_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098239_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098239_33	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0098239_33	eggNOG-mapper	935836.JAEL01000086_gene50	NA	NA
UHGV-0098239_34	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0098239_34	UniRef90	UniRef90_UPI001DCE9966	minor capsid protein	NA
UHGV-0098239_34	eggNOG-mapper	997296.PB1_16194	Minor capsid protein	NA
UHGV-0098239_34	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0098239_34	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0098239_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0098239_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098239_35	UniRef90	UniRef90_A0A7T9LSG3	Minor capsid protein	NA
UHGV-0098239_35	eggNOG-mapper	935836.JAEL01000021_gene1490	Minor capsid protein	NA
UHGV-0098239_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0098239_35	Structural annotation	PF11114	NA	NA
UHGV-0098239_36	Structural annotation	PF12691	NA	NA
UHGV-0098239_37	PHROG	phrog_820	major tail protein	tail
UHGV-0098239_37	UniRef90	UniRef90_A0A355UYH2	Capsid protein	NA
UHGV-0098239_37	eggNOG-mapper	1231057.AMGD01000018_gene3613	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0098239_37	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0098239_37	COG	COG5492	NA	NA
UHGV-0098239_38	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0098239_38	Structural annotation	PF10666	NA	NA
UHGV-0098239_39	PHROG	phrog_706	NA	unknown function
UHGV-0098239_39	UniRef90	UniRef90_A0A143ZUS4	Bacteriophage Gp15 protein	NA
UHGV-0098239_39	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0098239_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0098239_39	Structural annotation	PF06854	NA	NA
UHGV-0098239_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0098239_40	UniRef90	UniRef90_UPI001C0A6D30	phage tail tape measure protein	NA
UHGV-0098239_40	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0098239_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0098239_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0098239_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0098239_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0098239_41	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0098239_41	eggNOG-mapper	1121342.AUCO01000004_gene648	tail component	NA
UHGV-0098239_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0098239_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA