UHGV-0098279

Genome information

Genome length 41,824 bps

CDS count 78

Completeness 99.86% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098279
vOTU ID	vOTU-071425
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210307
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.96
Jumbo phage	No

Genome content
Genome length	41,824 bps
GC content	52.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	92.35%
Average CDS length	501.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098279_3	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0098279_3	Structural annotation	PF07238	NA	NA
UHGV-0098279_4	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0098279_4	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0098279_5	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0098279_5	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0098279_5	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0098279_6	PHROG	phrog_1194	NA	unknown function
UHGV-0098279_6	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0098279_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0098279_7	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0098279_7	COG	COG1511	NA	NA
UHGV-0098279_8	PHROG	phrog_706	NA	unknown function
UHGV-0098279_8	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0098279_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0098279_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0098279_8	Structural annotation	PF06854	NA	NA
UHGV-0098279_9	PHROG	phrog_11299	NA	unknown function
UHGV-0098279_9	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0098279_9	Structural annotation	PF10666	NA	NA
UHGV-0098279_10	PHROG	phrog_3099	NA	unknown function
UHGV-0098279_10	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0098279_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0098279_11	PHROG	phrog_3266	tail completion	connector
UHGV-0098279_11	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0098279_11	Structural annotation	PF12691	NA	NA
UHGV-0098279_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098279_12	UniRef90	UniRef90_A0A1C5N8K8	Minor capsid protein	NA
UHGV-0098279_12	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0098279_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0098279_12	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0098279_13	PHROG	phrog_3366	NA	unknown function
UHGV-0098279_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0098279_13	Pfam	PF20536	NA	DUF6751
UHGV-0098279_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0098279_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098279_14	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0098279_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0098279_15	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0098279_15	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0098279_15	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0098279_15	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098279_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0098279_16	UniRef90	UniRef90_A0A4D6BD32	Capsid and scaffold protein	NA
UHGV-0098279_16	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0098279_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098279_17	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0098279_17	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0098279_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098279_17	COG	COG2369	NA	NA
UHGV-0098279_17	Structural annotation	PF06152	NA	NA
UHGV-0098279_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098279_18	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0098279_18	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0098279_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098279_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098279_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098279_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0098279_19	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0098279_19	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0098279_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098279_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098279_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098279_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098279_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098279_20	PHROG	phrog_9479	NA	unknown function
UHGV-0098279_20	Structural annotation	PF15529	NA	NA
UHGV-0098279_22	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0098279_22	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0098279_22	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0098279_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0098279_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0098279_22	Pfam	PF14386	NA	DUF4417
UHGV-0098279_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0098279_22	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0098279_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098279_23	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0098279_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0098279_31	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0098279_32	PHROG	phrog_924	NA	unknown function
UHGV-0098279_32	UniRef90	UniRef90_UPI0007758757	NA	NA
UHGV-0098279_32	Pfam	PF04448	NA	DUF551
UHGV-0098279_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098279_32	Structural annotation	NF041588	NA	NA
UHGV-0098279_33	PHROG	phrog_22543	NA	unknown function
UHGV-0098279_36	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0098279_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098279_38	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0098279_38	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0098279_38	Structural annotation	PF17375	NA	NA
UHGV-0098279_39	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098279_39	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-0098279_39	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0098279_39	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0098279_39	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0098279_40	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0098279_40	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0098279_40	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0098279_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098279_40	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0098279_42	PHROG	phrog_18306	NA	unknown function
UHGV-0098279_42	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0098279_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0098279_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098279_43	UniRef90	UniRef90_A0A3A9ED12	ATP-binding protein	NA
UHGV-0098279_43	eggNOG-mapper	1232447.BAHW02000027_gene2105	NA	NA
UHGV-0098279_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0098279_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0098279_43	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0098279_44	PHROG	phrog_15768	NA	unknown function
UHGV-0098279_44	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0098279_44	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0098279_44	AcrCatalog	cluster_38323	NA	NA
UHGV-0098279_44	Pfam	PF19808	NA	DUF6291
UHGV-0098279_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098279_44	Structural annotation	PF19808	NA	NA
UHGV-0098279_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098279_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0098279_45	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0098279_45	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0098279_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098279_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0098279_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098279_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0098279_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0098279_46	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098279_46	UniRef90	UniRef90_A0A3A6DBU9	HNH endonuclease	NA
UHGV-0098279_46	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0098279_46	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0098279_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098279_47	UniRef90	UniRef90_A0A2T3EXE0	HNHc domain-containing protein	NA
UHGV-0098279_47	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0098279_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0098279_47	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0098279_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0098279_47	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0098279_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0098279_48	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0098279_48	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0098279_48	Structural annotation	PF05772	NA	NA
UHGV-0098279_49	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098279_49	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0098279_49	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0098279_49	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0098279_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0098279_51	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0098279_51	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0098279_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0098279_51	Structural annotation	PF05565	NA	NA
UHGV-0098279_53	PHROG	phrog_5781	NA	unknown function
UHGV-0098279_53	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0098279_53	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0098279_53	Pfam	PF14359	NA	DUF4406
UHGV-0098279_53	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0098279_53	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0098279_56	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0098279_56	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0098279_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098279_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098279_65	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0098279_65	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0098279_65	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0098279_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098279_65	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0098279_67	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-0098279_67	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-0098279_68	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0098279_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098279_68	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0098279_68	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098279_69	KOfam	K14059	int; integrase	NA
UHGV-0098279_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0098279_69	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0098279_69	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0098279_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098279_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098279_69	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0098279_70	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0098279_71	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0098279_72	PHROG	phrog_16490	NA	unknown function
UHGV-0098279_72	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0098279_74	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0098279_75	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0098279_76	PHROG	phrog_608	holin	lysis
UHGV-0098279_76	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0098279_76	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0098279_76	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0098279_76	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0098279_77	PHROG	phrog_37604	NA	unknown function
UHGV-0098279_77	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0098279_78	KOfam	K07273	acm; lysozyme	NA
UHGV-0098279_78	PHROG	phrog_291	endolysin	lysis
UHGV-0098279_78	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0098279_78	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0098279_78	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0098279_78	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0098279_78	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0098279_78	Structural annotation	PF01183, COG3757	NA	NA