UHGV-0098302

Genome information

Genome length 36,391 bps

CDS count 54

Completeness 97.60% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098302
vOTU ID	vOTU-009024
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226152
BioSample	SAMEA3708692
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.21
Jumbo phage	No

Genome content
Genome length	36,391 bps
GC content	40.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.85%
Average CDS length	642.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098302_1	PHROG	phrog_199	holin	lysis
UHGV-0098302_1	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0098302_1	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0098302_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0098302_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0098302_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0098302_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0098302_2	PHROG	phrog_9994	NA	unknown function
UHGV-0098302_2	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0098302_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0098302_3	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0098302_3	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0098302_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0098302_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0098302_4	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0098302_4	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0098302_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0098302_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0098302_5	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0098302_5	COG	COG5412	Phage-related protein	NA
UHGV-0098302_5	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0098302_6	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0098302_7	PHROG	phrog_1021	NA	unknown function
UHGV-0098302_7	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0098302_8	PHROG	phrog_885	major tail protein	tail
UHGV-0098302_8	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0098302_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0098302_9	PHROG	phrog_957	head protein	head and packaging
UHGV-0098302_9	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0098302_9	Structural annotation	PF12691	NA	NA
UHGV-0098302_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0098302_10	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0098302_10	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0098302_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0098302_11	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0098302_11	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0098302_11	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0098302_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0098302_12	PHROG	phrog_1236	head protein	head and packaging
UHGV-0098302_12	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0098302_12	Structural annotation	PF05135	NA	NA
UHGV-0098302_14	PHROG	phrog_212	major head protein	head and packaging
UHGV-0098302_14	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0098302_14	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0098302_14	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0098302_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0098302_15	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0098302_15	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0098302_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0098302_15	Structural annotation	PF06810	NA	NA
UHGV-0098302_16	Structural annotation	PF11344	NA	NA
UHGV-0098302_17	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0098302_17	UniRef90	UniRef90_A0A416ZY09	Phage_Mu_F domain-containing protein	NA
UHGV-0098302_17	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0098302_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0098302_17	COG	COG2369	NA	NA
UHGV-0098302_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0098302_19	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0098302_19	Structural annotation	PF10651	NA	NA
UHGV-0098302_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0098302_20	UniRef90	UniRef90_A0A3R6UWR4	Phage portal protein	NA
UHGV-0098302_20	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0098302_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098302_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0098302_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098302_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0098302_21	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0098302_21	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0098302_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098302_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098302_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098302_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098302_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098302_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0098302_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0098302_22	UniRef90	UniRef90_A0A416IA81	Terminase small subunit	NA
UHGV-0098302_22	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0098302_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0098302_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0098302_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0098302_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098302_24	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0098302_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0098302_24	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0098302_25	PHROG	phrog_17690	NA	unknown function
UHGV-0098302_25	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0098302_25	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0098302_26	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0098302_27	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0098302_27	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0098302_28	PHROG	phrog_8684	NA	unknown function
UHGV-0098302_28	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0098302_28	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0098302_28	Pfam	PF09643	YopX protein	YopX
UHGV-0098302_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0098302_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0098302_31	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0098302_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0098302_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0098302_32	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098302_32	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0098302_32	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0098302_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0098302_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098302_32	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0098302_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0098302_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0098302_33	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0098302_33	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0098302_33	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0098302_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0098302_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0098302_33	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0098302_35	PHROG	phrog_9804	NA	unknown function
UHGV-0098302_35	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0098302_35	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0098302_35	AcrCatalog	cluster_137185	NA	NA
UHGV-0098302_35	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0098302_35	Structural annotation	PF11417	NA	NA
UHGV-0098302_36	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098302_36	UniRef90	UniRef90_A0A417W6N9	Phage_rep_org_N domain-containing protein	NA
UHGV-0098302_36	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0098302_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0098302_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0098302_36	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0098302_37	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0098302_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098302_38	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0098302_38	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0098302_38	Pfam	PF06356	NA	DUF1064
UHGV-0098302_38	Structural annotation	PF06356	NA	NA
UHGV-0098302_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0098302_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098302_39	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0098302_39	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0098302_39	Pfam	PF03837	RecT family	RecT
UHGV-0098302_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0098302_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0098302_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0098302_41	PHROG	phrog_674	NA	unknown function
UHGV-0098302_41	UniRef90	UniRef90_UPI00156FBAC2	NA	NA
UHGV-0098302_41	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0098302_41	Pfam	PF07083	NA	DUF1351
UHGV-0098302_41	Structural annotation	PF07083	NA	NA
UHGV-0098302_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098302_43	UniRef90	UniRef90_A0A3R6XK93	Recombinase	NA
UHGV-0098302_43	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0098302_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0098302_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0098302_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0098302_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0098302_45	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0098302_45	Structural annotation	PF20063	NA	NA
UHGV-0098302_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098302_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0098302_48	UniRef90	UniRef90_A0A173W8D7	Transcriptional regulator, y4mF family	NA
UHGV-0098302_48	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098302_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098302_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098302_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0098302_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0098302_49	UniRef90	UniRef90_A0A416I9Z9	XRE family transcriptional regulator	NA
UHGV-0098302_49	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098302_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098302_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0098302_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098302_50	PHROG	phrog_20886	NA	unknown function
UHGV-0098302_50	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0098302_50	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0098302_50	Structural annotation	PF06114	NA	NA
UHGV-0098302_52	PHROG	phrog_7974	NA	unknown function
UHGV-0098302_52	eggNOG-mapper	931276.Cspa_c57370	Phage Mu protein F like protein	NA
UHGV-0098302_52	COG	COG2369	NA	NA
UHGV-0098302_53	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0098302_54	KOfam	K14059	int; integrase	NA
UHGV-0098302_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0098302_54	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0098302_54	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0098302_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098302_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098302_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA