UHGV-0098319

Genome information

vOTU vOTU-019390

Genome length 39,313 bps

CDS count 59

Completeness 77.72% (medium-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098319
vOTU ID	vOTU-019390
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202917
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	77.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.4
Jumbo phage	No

Genome content
Genome length	39,313 bps
GC content	54.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.70%
Average CDS length	609.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098319_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098319_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0098319_1	UniRef90	UniRef90_UPI0015E154C6	recombinase family protein	NA
UHGV-0098319_1	eggNOG-mapper	1297617.JPJD01000028_gene2289	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0098319_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0098319_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098319_1	Structural annotation	PF00239, NF033518, COG1961	NA	NA
UHGV-0098319_2	eggNOG-mapper	428125.CLOLEP_02880	NA	NA
UHGV-0098319_3	UniRef90	UniRef90_A0A117SGY0	Nucleotidyl transferase	NA
UHGV-0098319_3	eggNOG-mapper	596330.HMPREF0628_0151	NA	NA
UHGV-0098319_3	Pfam	PF13545	Crp-like helix-turn-helix domain	HTH_Crp_2
UHGV-0098319_4	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0098319_4	PHROG	phrog_2713	NA	unknown function
UHGV-0098319_4	UniRef90	UniRef90_A0A075KH12	N-6 DNA methylase	NA
UHGV-0098319_4	eggNOG-mapper	484770.UFO1_4001	Eco57I restriction-modification methylase	NA
UHGV-0098319_4	PADLOC	REase_MTase_IIG_00029	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0098319_4	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0098319_4	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0098319_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098319_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098319_5	UniRef90	UniRef90_UPI001064F2E2	S24 family peptidase	NA
UHGV-0098319_5	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-0098319_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098319_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098319_5	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0098319_6	UniRef90	UniRef90_UPI001066FBF8	XRE family transcriptional regulator	NA
UHGV-0098319_6	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0098319_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0098319_14	PHROG	phrog_750	NA	unknown function
UHGV-0098319_14	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0098319_14	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0098319_17	PHROG	phrog_310	transposase	integration and excision
UHGV-0098319_17	UniRef90	UniRef90_A0A372V359	MerR family transcriptional regulator	NA
UHGV-0098319_17	eggNOG-mapper	552398.HMPREF0866_03136	Mu transposase, C-terminal	NA
UHGV-0098319_17	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0098319_17	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0098319_17	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0098319_17	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0098319_17	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0098319_18	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0098319_18	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0098319_18	UniRef90	UniRef90_A0A372V134	ATP-binding protein	NA
UHGV-0098319_18	eggNOG-mapper	445972.ANACOL_00519	AAA domain	NA
UHGV-0098319_18	Pfam	PF13401	AAA domain	AAA_22
UHGV-0098319_18	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0098319_18	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0098319_22	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0098319_22	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0098319_22	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0098319_22	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0098319_22	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0098319_22	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0098319_23	PHROG	phrog_286	NA	unknown function
UHGV-0098319_23	UniRef90	UniRef90_A0A372V1N5	Regulatory protein GemA	NA
UHGV-0098319_23	eggNOG-mapper	665956.HMPREF1032_04095	NA	NA
UHGV-0098319_23	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0098319_23	Structural annotation	PF06252	NA	NA
UHGV-0098319_24	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0098319_24	UniRef90	UniRef90_G9RT11	Mor domain-containing protein	NA
UHGV-0098319_24	eggNOG-mapper	665956.HMPREF1032_04096	Mor transcription activator family	NA
UHGV-0098319_24	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0098319_24	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0098319_25	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0098319_25	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0098319_26	PHROG	phrog_25462	NA	unknown function
UHGV-0098319_26	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0098319_26	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0098319_27	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0098319_27	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-0098319_27	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0098319_27	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0098319_27	Structural annotation	PF11985	NA	NA
UHGV-0098319_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0098319_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0098319_28	UniRef90	UniRef90_A0A1Y4TKE7	NGN domain-containing protein	NA
UHGV-0098319_28	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-0098319_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0098319_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0098319_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0098319_30	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0098319_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098319_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0098319_31	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-0098319_31	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0098319_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098319_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098319_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098319_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098319_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098319_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098319_33	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0098319_33	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0098319_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098319_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098319_34	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0098319_34	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0098319_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098319_34	COG	COG2369	NA	NA
UHGV-0098319_34	Structural annotation	PF06152	NA	NA
UHGV-0098319_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0098319_36	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0098319_36	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0098319_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0098319_36	Structural annotation	PF06810	NA	NA
UHGV-0098319_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0098319_37	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0098319_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0098319_38	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0098319_38	UniRef90	UniRef90_UPI001967F4C6	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0098319_38	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0098319_38	Structural annotation	PF09124	NA	NA
UHGV-0098319_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098319_39	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0098319_39	Pfam	PF13262	NA	DUF4054
UHGV-0098319_40	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0098319_41	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0098319_41	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-0098319_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0098319_41	Structural annotation	PF11114	NA	NA
UHGV-0098319_42	PHROG	phrog_3266	tail completion	connector
UHGV-0098319_42	Structural annotation	PF20765	NA	NA
UHGV-0098319_43	PHROG	phrog_820	major tail protein	tail
UHGV-0098319_43	COG	COG5492	NA	NA
UHGV-0098319_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0098319_45	PHROG	phrog_706	NA	unknown function
UHGV-0098319_45	UniRef90	UniRef90_A0A1W7LQ76	Bacteriophage Gp15 protein	NA
UHGV-0098319_45	eggNOG-mapper	536233.CLO_1574	Bacteriophage Gp15 protein	NA
UHGV-0098319_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0098319_46	PHROG	phrog_23464	NA	unknown function
UHGV-0098319_46	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0098319_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0098319_46	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0098319_47	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0098319_47	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0098319_47	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0098319_48	PHROG	phrog_1887	tail protein	tail
UHGV-0098319_48	eggNOG-mapper	714083.JH370377_gene1317	NA	NA
UHGV-0098319_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0098319_50	PHROG	phrog_25888	NA	unknown function
UHGV-0098319_53	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0098319_56	PHROG	phrog_11037	NA	unknown function
UHGV-0098319_56	UniRef90	UniRef90_A0A6I3QQJ9	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0098319_56	eggNOG-mapper	665956.HMPREF1032_03271	NA	NA
UHGV-0098319_56	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0098319_57	PHROG	phrog_1129	holin	lysis
UHGV-0098319_57	UniRef90	UniRef90_A0A843HPK9	Phage holin family protein	NA
UHGV-0098319_57	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0098319_57	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0098319_57	Structural annotation	PF16079	NA	NA
UHGV-0098319_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0098319_58	PHROG	phrog_12862	NA	unknown function
UHGV-0098319_58	UniRef90	UniRef90_A0A1Y4IHD3	Methyltransferase	NA
UHGV-0098319_58	eggNOG-mapper	665956.HMPREF1032_03611	DNA methylase	NA
UHGV-0098319_58	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0098319_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0098319_58	COG	COG0863	DNA modification methylase	NA
UHGV-0098319_58	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA