UHGV-0098322

Genome information

Genome length 23,192 bps

CDS count 46

Completeness 56.79% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098322
vOTU ID	vOTU-040383
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202926
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.18
Jumbo phage	No

Genome content
Genome length	23,192 bps
GC content	42.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.99%
Average CDS length	452.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098322_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0098322_2	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0098322_2	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098322_4	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0098322_4	UniRef90	UniRef90_A0A6N9QEJ3	Terminase	NA
UHGV-0098322_4	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0098322_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0098322_4	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0098322_4	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0098322_4	COG	COG5362	Phage terminase large subunit	NA
UHGV-0098322_4	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0098322_5	PHROG	phrog_1233	NA	unknown function
UHGV-0098322_5	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0098322_5	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0098322_8	PHROG	phrog_15863	NA	unknown function
UHGV-0098322_8	UniRef90	UniRef90_UPI001650F7FE	molecular chaperone DnaJ	NA
UHGV-0098322_8	eggNOG-mapper	1158604.I591_02854	DnaJ molecular chaperone homology domain	NA
UHGV-0098322_8	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0098322_9	PHROG	phrog_32772	NA	unknown function
UHGV-0098322_9	Structural annotation	NF010188, COG2157	NA	NA
UHGV-0098322_11	Structural annotation	PF17917	NA	NA
UHGV-0098322_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098322_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0098322_12	UniRef90	UniRef90_R5MBZ3	Putative integrase bacteriophage 370.1	NA
UHGV-0098322_12	eggNOG-mapper	1410668.JNKC01000014_gene2480	Resolvase, N terminal domain	NA
UHGV-0098322_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0098322_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-0098322_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098322_12	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0098322_18	UniRef90	UniRef90_UPI001F46867E	NA	NA
UHGV-0098322_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0098322_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0098322_19	UniRef90	UniRef90_UPI0008C82B33	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098322_19	eggNOG-mapper	1201292.DR75_1527	C-5 cytosine-specific DNA methylase	NA
UHGV-0098322_19	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0098322_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0098322_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098322_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098322_19	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0098322_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098322_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0098322_24	UniRef90	UniRef90_A0A1C5QCL2	Single-stranded DNA-binding protein	NA
UHGV-0098322_24	eggNOG-mapper	1120998.AUFC01000019_gene325	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0098322_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098322_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0098322_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098322_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0098322_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0098322_26	PHROG	phrog_4433	NA	unknown function
UHGV-0098322_26	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0098322_26	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0098322_26	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0098322_28	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098322_28	UniRef90	UniRef90_A0A136Q8L7	Putative holliday junction resolvase Hjc (Fragment)	NA
UHGV-0098322_28	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0098322_28	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0098322_31	PHROG	phrog_9804	NA	unknown function
UHGV-0098322_31	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0098322_31	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0098322_31	AcrCatalog	cluster_137185	NA	NA
UHGV-0098322_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0098322_31	Structural annotation	PF11417	NA	NA
UHGV-0098322_32	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098322_32	UniRef90	UniRef90_A0A0J8D655	Replication protein O	NA
UHGV-0098322_32	eggNOG-mapper	1139219.I569_00067	DnaD domain protein	NA
UHGV-0098322_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098322_32	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0098322_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0098322_33	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0098322_34	PHROG	phrog_7566	NA	unknown function
UHGV-0098322_34	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0098322_35	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0098322_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0098322_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0098322_36	PHROG	phrog_6244	NA	unknown function
UHGV-0098322_36	eggNOG-mapper	1423775.BAMN01000011_gene621	NA	NA
UHGV-0098322_37	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0098322_39	PHROG	phrog_1123	NA	unknown function
UHGV-0098322_39	UniRef90	UniRef90_A0A858BT04	DNA gyrase	NA
UHGV-0098322_39	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0098322_39	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0098322_41	UniRef90	UniRef90_UPI001C5F1ACE	helix-turn-helix domain-containing protein	NA
UHGV-0098322_41	eggNOG-mapper	1331060.RLDS_11455	TIGRFAM DNA binding domain	NA
UHGV-0098322_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0098322_41	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0098322_41	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0098322_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098322_42	UniRef90	UniRef90_A0A858BVX5	Helix-turn-helix transcriptional regulator	NA
UHGV-0098322_42	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098322_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098322_42	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0098322_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098322_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098322_43	UniRef90	UniRef90_A0A1C5T7G0	Transcriptional repressor DicA	NA
UHGV-0098322_43	eggNOG-mapper	1033737.CAEV01000076_gene557	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098322_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098322_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098322_43	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098322_44	PHROG	phrog_87	metallo-protease	other
UHGV-0098322_44	UniRef90	UniRef90_A0A1C5T7C0	Metallopeptidase immA	NA
UHGV-0098322_44	eggNOG-mapper	574375.BAGA_00350	IrrE N-terminal-like domain	NA
UHGV-0098322_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0098322_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0098322_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0098322_45	eggNOG-mapper	1408823.AXUS01000008_gene2298	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0098322_45	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0098322_45	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0098322_46	KOfam	K14059	int; integrase	NA
UHGV-0098322_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0098322_46	UniRef90	UniRef90_UPI001CF85A99	site-specific integrase	NA
UHGV-0098322_46	eggNOG-mapper	580331.Thit_1365	Belongs to the 'phage' integrase family	NA
UHGV-0098322_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0098322_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098322_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098322_46	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA