UHGV-0098340

Genome information

Genome length 35,310 bps

CDS count 64

Completeness 92.39% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098340
vOTU ID	vOTU-063561
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_223164
BioSample	SAMEA3541471
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.07
Jumbo phage	No

Genome content
Genome length	35,310 bps
GC content	51.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.05%
Average CDS length	500.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098340_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0098340_4	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0098340_4	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0098340_4	Pfam	PF14359	NA	DUF4406
UHGV-0098340_4	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0098340_4	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0098340_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0098340_6	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0098340_6	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0098340_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0098340_6	Structural annotation	PF05565	NA	NA
UHGV-0098340_8	PHROG	phrog_14970	NA	unknown function
UHGV-0098340_8	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0098340_8	eggNOG-mapper	272562.CA_C1936	double-strand break repair protein	NA
UHGV-0098340_8	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0098340_8	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0098340_8	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0098340_9	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0098340_9	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0098340_9	Structural annotation	PF05772	NA	NA
UHGV-0098340_10	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098340_10	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0098340_10	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0098340_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0098340_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098340_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0098340_11	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0098340_11	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0098340_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098340_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0098340_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098340_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0098340_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0098340_13	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0098340_13	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0098340_13	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0098340_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0098340_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098340_13	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0098340_14	PHROG	phrog_18306	NA	unknown function
UHGV-0098340_14	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0098340_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0098340_16	UniRef90	UniRef90_A0A3R6ATD0	DNA cytosine methyltransferase	NA
UHGV-0098340_16	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0098340_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098340_16	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0098340_17	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098340_17	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0098340_17	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0098340_17	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0098340_17	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0098340_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098340_18	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0098340_18	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0098340_18	Structural annotation	PF17375	NA	NA
UHGV-0098340_19	PHROG	phrog_38832	NA	unknown function
UHGV-0098340_21	PHROG	phrog_10714	NA	unknown function
UHGV-0098340_24	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0098340_30	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0098340_30	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0098340_31	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0098340_31	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0098340_31	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0098340_33	eggNOG-mapper	97139.C824_00726	NA	NA
UHGV-0098340_33	Structural annotation	PF02211	NA	NA
UHGV-0098340_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0098340_35	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0098340_35	UniRef90	UniRef90_A0A1C5ZCG7	ParB/RepB/Spo0J family partition protein	NA
UHGV-0098340_35	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0098340_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0098340_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0098340_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0098340_35	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0098340_36	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0098340_36	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0098340_36	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0098340_36	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0098340_36	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0098340_37	KOfam	K01854	glf; UDP-galactopyranose mutase [EC:5.4.99.9]	NA
UHGV-0098340_37	PHROG	phrog_9677	NA	unknown function
UHGV-0098340_37	UniRef90	UniRef90_A0A378NUT7	UDP-galactopyranose mutase	NA
UHGV-0098340_37	eggNOG-mapper	546270.GEMHA0001_1123	UDP-galactopyranose mutase	NA
UHGV-0098340_37	Pfam	PF13450	NAD(P)-binding Rossmann-like domain	NAD_binding_8
UHGV-0098340_37	Pfam	PF03275	UDP-galactopyranose mutase	GLF
UHGV-0098340_37	NCBIFam	TIGR00031.1	UDP-galactopyranose mutase	NA
UHGV-0098340_37	COG	COG0562	UDP-galactopyranose mutase	NA
UHGV-0098340_37	Structural annotation	PF03275, PF13450, MF_02074, TIGR00031, COG0562	NA	NA
UHGV-0098340_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098340_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0098340_39	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0098340_39	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0098340_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098340_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098340_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098340_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098340_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098340_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098340_40	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0098340_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0098340_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098340_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098340_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098340_41	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0098340_41	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0098340_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098340_41	COG	COG2369	NA	NA
UHGV-0098340_41	Structural annotation	PF06152	NA	NA
UHGV-0098340_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0098340_42	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0098340_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0098340_43	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0098340_43	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0098340_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0098340_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0098340_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0098340_43	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0098340_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098340_44	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0098340_45	KOfam	K14059	int; integrase	NA
UHGV-0098340_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0098340_45	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-0098340_45	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-0098340_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0098340_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098340_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098340_45	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0098340_46	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-0098340_46	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0098340_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0098340_48	Pfam	PF19808	NA	DUF6291
UHGV-0098340_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098340_49	eggNOG-mapper	97138.C820_00806	Bacteriophage replication protein O	NA
UHGV-0098340_54	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098340_54	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0098340_54	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-0098340_54	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0098340_54	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098340_54	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098340_54	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098340_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098340_54	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098340_56	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0098340_56	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0098340_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098340_57	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0098340_57	eggNOG-mapper	580331.Thit_1400	NA	NA
UHGV-0098340_57	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0098340_59	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0098340_59	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-0098340_59	eggNOG-mapper	1232449.BAHV02000010_gene2723	domain protein	NA
UHGV-0098340_59	COG	COG1511	NA	NA
UHGV-0098340_60	PHROG	phrog_11299	NA	unknown function
UHGV-0098340_60	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0098340_60	Structural annotation	PF10666	NA	NA
UHGV-0098340_61	UniRef90	UniRef90_UPI001898C9D7	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA
UHGV-0098340_61	eggNOG-mapper	864563.HMPREF9166_1832	NA	NA
UHGV-0098340_61	AcrCatalog	cluster_18515	NA	NA
UHGV-0098340_62	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0098340_62	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0098340_62	UniRef90	UniRef90_UPI00189B762A	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0098340_62	eggNOG-mapper	864563.HMPREF9166_1833	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0098340_62	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0098340_62	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0098340_62	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0098340_63	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098340_63	UniRef90	UniRef90_UPI00189F11C5	minor capsid protein	NA
UHGV-0098340_63	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0098340_63	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0098340_63	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0098340_64	UniRef90	UniRef90_UPI000F54A0BC	lipoprotein	NA
UHGV-0098340_64	eggNOG-mapper	545697.HMPREF0216_02858	NA	NA