UHGV-0098348

Genome information

Genome length 40,845 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098348
vOTU ID	vOTU-063563
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216589
BioSample	SAMEA3541558
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.78
Jumbo phage	No

Genome content
Genome length	40,845 bps
GC content	42.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.57%
Average CDS length	553.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098348_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098348_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0098348_1	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0098348_1	eggNOG-mapper	883109.HMPREF0380_00268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0098348_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098348_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0098348_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098348_1	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0098348_2	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098348_2	UniRef90	UniRef90_R6DSN2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0098348_2	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0098348_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098348_2	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0098348_3	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098348_3	eggNOG-mapper	272626.lin2412	Replication initiation and membrane attachment	NA
UHGV-0098348_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098348_3	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0098348_4	PHROG	phrog_9804	NA	unknown function
UHGV-0098348_4	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0098348_4	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0098348_4	AcrCatalog	cluster_137185	NA	NA
UHGV-0098348_4	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0098348_4	Structural annotation	PF11417	NA	NA
UHGV-0098348_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0098348_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0098348_5	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0098348_5	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0098348_5	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0098348_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0098348_5	COG	COG0863	DNA modification methylase	NA
UHGV-0098348_5	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0098348_9	PHROG	phrog_1672	NA	unknown function
UHGV-0098348_10	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0098348_10	UniRef90	UniRef90_A0A1C7GBP2	Methyltransferase	NA
UHGV-0098348_10	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0098348_10	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0098348_10	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0098348_10	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0098348_10	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0098348_12	PHROG	phrog_1485	NA	unknown function
UHGV-0098348_12	UniRef90	UniRef90_A0A3S8RPB6	NA	NA
UHGV-0098348_12	eggNOG-mapper	1444310.JANV01000096_gene3245	NA	NA
UHGV-0098348_12	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0098348_12	Structural annotation	PF07659	NA	NA
UHGV-0098348_13	PHROG	phrog_25385	NA	unknown function
UHGV-0098348_13	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0098348_16	Structural annotation	PF18066	NA	NA
UHGV-0098348_17	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0098348_19	Structural annotation	COG1724	NA	NA
UHGV-0098348_20	Structural annotation	PF17917	NA	NA
UHGV-0098348_22	PHROG	phrog_15863	NA	unknown function
UHGV-0098348_22	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-0098348_22	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0098348_22	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0098348_23	Structural annotation	NF040976	NA	NA
UHGV-0098348_25	PHROG	phrog_2319	NA	unknown function
UHGV-0098348_25	eggNOG-mapper	713586.KB900537_gene3115	NA	NA
UHGV-0098348_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0098348_27	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0098348_27	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0098348_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0098348_27	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0098348_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0098348_27	COG	COG5362	Phage terminase large subunit	NA
UHGV-0098348_27	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0098348_29	PHROG	phrog_156	portal protein	head and packaging
UHGV-0098348_29	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0098348_29	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098348_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-0098348_31	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0098348_31	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0098348_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098348_32	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0098348_34	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0098348_34	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0098348_34	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0098348_35	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0098348_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0098348_36	eggNOG-mapper	931626.Awo_c34130	Leucine rich repeats (6 copies)	NA
UHGV-0098348_36	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0098348_36	Pfam	PF19789	NA	DUF6273
UHGV-0098348_36	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0098348_36	Structural annotation	PF19789	NA	NA
UHGV-0098348_38	PHROG	phrog_134	NA	unknown function
UHGV-0098348_38	UniRef90	UniRef90_A0A3E5AQ73	XkdX family protein	NA
UHGV-0098348_38	eggNOG-mapper	755731.Clo1100_0560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0098348_38	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0098348_39	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0098348_39	Structural annotation	TIGR02559	NA	NA
UHGV-0098348_40	PHROG	phrog_9854	NA	unknown function
UHGV-0098348_40	UniRef90	UniRef90_A0A1H2SFG5	LPD38 domain-containing protein	NA
UHGV-0098348_40	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0098348_40	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0098348_40	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0098348_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0098348_41	PHROG	phrog_894	endolysin	lysis
UHGV-0098348_41	UniRef90	UniRef90_A0A3B8P2A9	Peptidase M15	NA
UHGV-0098348_41	eggNOG-mapper	390235.PputW619_1627	peptidase M15A	NA
UHGV-0098348_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0098348_41	COG	COG3108	NA	NA
UHGV-0098348_41	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0098348_42	PHROG	phrog_4105	NA	unknown function
UHGV-0098348_44	PHROG	phrog_6918	holin	lysis
UHGV-0098348_44	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0098348_44	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0098348_45	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0098348_45	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0098348_45	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0098348_46	PHROG	phrog_21718	NA	unknown function
UHGV-0098348_46	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0098348_48	PHROG	phrog_16490	NA	unknown function
UHGV-0098348_48	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0098348_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0098348_51	KOfam	K14059	int; integrase	NA
UHGV-0098348_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0098348_51	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0098348_51	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0098348_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098348_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0098348_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0098348_52	KOfam	K06882	NA	NA
UHGV-0098348_52	eggNOG-mapper	1235802.C823_02972	competence protein COMEC	NA
UHGV-0098348_52	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0098348_53	PHROG	phrog_20936	NA	unknown function
UHGV-0098348_53	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0098348_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0098348_53	Structural annotation	PF06114	NA	NA
UHGV-0098348_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098348_54	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0098348_54	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098348_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0098348_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0098348_54	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0098348_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098348_55	UniRef90	UniRef90_UPI0018AA5D9A	helix-turn-helix transcriptional regulator	NA
UHGV-0098348_55	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098348_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098348_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098348_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0098348_59	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0098348_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098348_60	UniRef90	UniRef90_A0A807DIK3	XRE family transcriptional regulator	NA
UHGV-0098348_60	eggNOG-mapper	1127131.WEISSC39_00160	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098348_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0098348_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098348_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0098348_61	Structural annotation	NF040990	NA	NA
UHGV-0098348_63	PHROG	phrog_22529	NA	unknown function
UHGV-0098348_63	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0098348_63	eggNOG-mapper	411902.CLOBOL_03511	3D domain	NA
UHGV-0098348_63	Pfam	PF06725	3D domain	3D
UHGV-0098348_63	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0098348_63	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-0098348_64	PHROG	phrog_2113	NA	unknown function
UHGV-0098348_66	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098348_66	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0098348_66	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0098348_67	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098348_67	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0098348_67	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0098348_67	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0098348_67	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0098348_67	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0098348_68	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0098348_68	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0098348_68	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0098348_68	Structural annotation	PF05772	NA	NA
UHGV-0098348_69	PHROG	phrog_7566	NA	unknown function
UHGV-0098348_69	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA