UHGV-0098390

Genome information

Genome length 42,219 bps

CDS count 64

Completeness 99.34% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098390
vOTU ID	vOTU-062498
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206307
BioSample	SAMEA3449206
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	80.1
Jumbo phage	No

Genome content
Genome length	42,219 bps
GC content	47.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	88.15%
Average CDS length	583.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098390_1	UniRef90	UniRef90_A0A3A9SPQ1	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0098390_1	eggNOG-mapper	1280682.AUKA01000003_gene1373	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0098390_1	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0098390_2	KOfam	K14059	int; integrase	NA
UHGV-0098390_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0098390_2	UniRef90	UniRef90_A0A3B9DUU2	Tyr recombinase domain-containing protein	NA
UHGV-0098390_2	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0098390_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0098390_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098390_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098390_3	UniRef90	UniRef90_UPI001E4DC63D	DNA-binding protein	NA
UHGV-0098390_3	eggNOG-mapper	706434.HMPREF9429_00185	Virulence protein RhuM family	NA
UHGV-0098390_3	COG	COG3943	NA	NA
UHGV-0098390_4	PHROG	phrog_9605	NA	unknown function
UHGV-0098390_4	UniRef90	UniRef90_A0A3B9DUZ3	NA	NA
UHGV-0098390_4	eggNOG-mapper	1122216.AUHW01000007_gene1474	NA	NA
UHGV-0098390_4	Pfam	PF12358	NA	DUF3644
UHGV-0098390_4	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-0098390_4	Structural annotation	PF12358, COG1895	NA	NA
UHGV-0098390_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098390_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098390_5	UniRef90	UniRef90_A0A3B9DVE9	Repressor LexA	NA
UHGV-0098390_5	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0098390_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0098390_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098390_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098390_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0098390_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0098390_6	UniRef90	UniRef90_A0A3B9DWG3	XRE family transcriptional regulator	NA
UHGV-0098390_6	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098390_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098390_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0098390_11	PHROG	phrog_31911	NA	unknown function
UHGV-0098390_11	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-0098390_11	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-0098390_12	Structural annotation	PF17600	NA	NA
UHGV-0098390_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0098390_15	UniRef90	UniRef90_R6ADZ8	Siphovirus Gp157	NA
UHGV-0098390_15	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0098390_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0098390_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0098390_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098390_16	UniRef90	UniRef90_UPI000F633C17	ATP-binding protein	NA
UHGV-0098390_16	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0098390_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0098390_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0098390_17	PHROG	phrog_2698	NA	unknown function
UHGV-0098390_17	UniRef90	UniRef90_A0A174PNQ6	NA	NA
UHGV-0098390_17	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0098390_18	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0098390_18	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0098390_18	UniRef90	UniRef90_R6AUC1	Primase C-terminal domain protein	NA
UHGV-0098390_18	eggNOG-mapper	1232428.CAVO010000021_gene813	Primase C terminal 2 (PriCT-2)	NA
UHGV-0098390_18	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0098390_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-0098390_18	COG	COG3598	RecA-family ATPase	NA
UHGV-0098390_18	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0098390_19	Structural annotation	PF05406	NA	NA
UHGV-0098390_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0098390_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098390_23	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0098390_23	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0098390_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0098390_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098390_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0098390_24	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0098390_25	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0098390_26	PHROG	phrog_3243	NA	unknown function
UHGV-0098390_26	eggNOG-mapper	568816.Acin_1295	NA	NA
UHGV-0098390_26	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0098390_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0098390_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0098390_27	UniRef90	UniRef90_R6AGU2	Phage terminase small subunit	NA
UHGV-0098390_27	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0098390_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0098390_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0098390_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0098390_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098390_28	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0098390_28	UniRef90	UniRef90_A0A3B9DUU0	PBSX family phage terminase large subunit	NA
UHGV-0098390_28	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0098390_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098390_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098390_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0098390_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098390_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098390_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0098390_29	UniRef90	UniRef90_S7J9T3	SPP1 family phage portal protein	NA
UHGV-0098390_29	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0098390_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098390_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0098390_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098390_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0098390_30	UniRef90	UniRef90_A0A0J6WUK7	Phage minor structural protein GP20	NA
UHGV-0098390_30	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0098390_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0098390_30	Structural annotation	PF06810	NA	NA
UHGV-0098390_31	PHROG	phrog_247	major head protein	head and packaging
UHGV-0098390_31	UniRef90	UniRef90_S7HTI1	Coat protein	NA
UHGV-0098390_31	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0098390_31	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0098390_31	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0098390_32	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0098390_32	UniRef90	UniRef90_UPI001F405464	minor capsid protein	NA
UHGV-0098390_32	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0098390_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0098390_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0098390_32	COG	COG2369	NA	NA
UHGV-0098390_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0098390_35	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0098390_35	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0098390_36	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0098390_36	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0098390_36	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0098390_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0098390_37	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0098390_37	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0098390_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0098390_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0098390_38	PHROG	phrog_525	NA	unknown function
UHGV-0098390_38	UniRef90	UniRef90_UPI0011A26FBC	NA	NA
UHGV-0098390_38	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0098390_38	Pfam	PF20765	NA	DUF6838
UHGV-0098390_38	Structural annotation	PF20765	NA	NA
UHGV-0098390_39	PHROG	phrog_1480	tail sheath	tail
UHGV-0098390_39	UniRef90	UniRef90_A0A269TCE8	Phage tail sheath protein	NA
UHGV-0098390_39	eggNOG-mapper	1273103.NM10_01039	Phage tail sheath C-terminal domain	NA
UHGV-0098390_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0098390_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0098390_39	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0098390_40	PHROG	phrog_365	tail protein	tail
UHGV-0098390_40	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0098390_40	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0098390_40	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0098390_40	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0098390_41	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0098390_41	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0098390_41	eggNOG-mapper	1111454.HMPREF1250_0193	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0098390_41	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0098390_41	Structural annotation	PF08890	NA	NA
UHGV-0098390_42	PHROG	phrog_16692	NA	unknown function
UHGV-0098390_42	UniRef90	UniRef90_U7ULG1	Tail tape measure protein, TIGR01760 family	NA
UHGV-0098390_42	eggNOG-mapper	1111454.HMPREF1250_0194	Phage-related minor tail protein	NA
UHGV-0098390_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0098390_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0098390_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0098390_42	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0098390_43	PHROG	phrog_380	endolysin	lysis
UHGV-0098390_43	UniRef90	UniRef90_W8TF03	Phage-like element PBSX protein XkdP	NA
UHGV-0098390_43	eggNOG-mapper	1273103.NM10_01019	LysM domain	NA
UHGV-0098390_43	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0098390_43	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0098390_44	PHROG	phrog_400	tail protein	tail
UHGV-0098390_44	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0098390_44	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0098390_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0098390_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0098390_45	PHROG	phrog_579	NA	unknown function
UHGV-0098390_45	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-0098390_45	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-0098390_45	Pfam	PF10844	NA	DUF2577
UHGV-0098390_45	Structural annotation	PF10844	NA	NA
UHGV-0098390_46	PHROG	phrog_120	baseplate protein	tail
UHGV-0098390_46	UniRef90	UniRef90_A0A0J6WX87	NA	NA
UHGV-0098390_46	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0098390_46	Pfam	PF10934	NA	DUF2634
UHGV-0098390_46	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0098390_47	PHROG	phrog_6	baseplate protein	tail
UHGV-0098390_47	UniRef90	UniRef90_U7UJ67	Baseplate J-like protein	NA
UHGV-0098390_47	eggNOG-mapper	1111454.HMPREF1250_0199	Baseplate J-like protein	NA
UHGV-0098390_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0098390_47	COG	COG3299	NA	NA
UHGV-0098390_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0098390_48	PHROG	phrog_521	tail protein	tail
UHGV-0098390_48	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-0098390_48	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0098390_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0098390_48	COG	COG3778	NA	NA
UHGV-0098390_48	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0098390_49	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0098390_49	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-0098390_49	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0098390_49	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0098390_49	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0098390_49	Structural annotation	PF12571	NA	NA
UHGV-0098390_50	eggNOG-mapper	1273103.NM10_00979	NA	NA
UHGV-0098390_50	Structural annotation	PF10651	NA	NA
UHGV-0098390_51	eggNOG-mapper	1232428.CAVO010000002_gene2343	NA	NA
UHGV-0098390_52	PHROG	phrog_13589	NA	unknown function
UHGV-0098390_52	eggNOG-mapper	568816.Acin_1953	nuclear chromosome segregation	NA
UHGV-0098390_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098390_54	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0098390_55	KOfam	K14059	int; integrase	NA
UHGV-0098390_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0098390_55	UniRef90	UniRef90_A0A1G5VJA4	Site-specific recombinase XerD	NA
UHGV-0098390_55	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0098390_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098390_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0098390_55	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0098390_60	KOfam	K07273	acm; lysozyme	NA
UHGV-0098390_60	PHROG	phrog_291	endolysin	lysis
UHGV-0098390_60	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0098390_60	eggNOG-mapper	1122217.KB899577_gene1847	Glycosyl hydrolase family 25	NA
UHGV-0098390_60	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0098390_60	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0098390_60	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0098390_62	PHROG	phrog_1281	NA	unknown function
UHGV-0098390_62	UniRef90	UniRef90_A0A417A414	NA	NA
UHGV-0098390_62	eggNOG-mapper	1000569.HMPREF1040_1612	NA	NA
UHGV-0098390_62	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0098390_62	COG	COG3600	NA	NA
UHGV-0098390_62	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0098390_63	PHROG	phrog_5763	NA	unknown function
UHGV-0098390_63	UniRef90	UniRef90_A0A1X9T226	Putative membrane protein	NA
UHGV-0098390_63	eggNOG-mapper	944564.HMPREF9200_0609	NA	NA