UHGV-0098439

Genome information

Genome length 36,618 bps

CDS count 53

Completeness 94.70% (high-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098439
vOTU ID	vOTU-014483
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230148
BioSample	SAMEA3708674
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.75
Jumbo phage	No

Genome content
Genome length	36,618 bps
GC content	45.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.61%
Average CDS length	654.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098439_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098439_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0098439_1	UniRef90	UniRef90_R5LS99	Resolvase domain protein	NA
UHGV-0098439_1	eggNOG-mapper	610130.Closa_2885	Resolvase, N terminal domain	NA
UHGV-0098439_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0098439_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0098439_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0098439_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098439_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0098439_2	PHROG	phrog_16228	NA	unknown function
UHGV-0098439_2	UniRef90	UniRef90_R6Z895	Uma2 domain-containing protein	NA
UHGV-0098439_2	eggNOG-mapper	478749.BRYFOR_07230	Putative restriction endonuclease	NA
UHGV-0098439_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0098439_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0098439_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0098439_3	PHROG	phrog_7854	endolysin	lysis
UHGV-0098439_3	UniRef90	UniRef90_A0A174X6J3	Lipoprotein	NA
UHGV-0098439_3	eggNOG-mapper	720554.Clocl_3520	cell wall binding repeat	NA
UHGV-0098439_3	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0098439_3	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0098439_4	PHROG	phrog_1847	NA	unknown function
UHGV-0098439_4	UniRef90	UniRef90_R6ZTZ7	T5orf172 domain-containing protein	NA
UHGV-0098439_4	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0098439_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0098439_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098439_4	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0098439_5	PHROG	phrog_87	metallo-protease	other
UHGV-0098439_5	UniRef90	UniRef90_R6ZEH8	Putative toxin-antitoxin system toxin component	NA
UHGV-0098439_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0098439_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0098439_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0098439_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0098439_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098439_6	UniRef90	UniRef90_R6ZMD8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0098439_6	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098439_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098439_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0098439_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098439_7	UniRef90	UniRef90_A0A416G2X0	XRE family transcriptional regulator	NA
UHGV-0098439_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098439_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098439_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0098439_10	eggNOG-mapper	610130.Closa_2884	NA	NA
UHGV-0098439_14	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0098439_14	PHROG	phrog_5889	NA	unknown function
UHGV-0098439_14	UniRef90	UniRef90_UPI001BC25CB7	HD family phosphohydrolase	NA
UHGV-0098439_14	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0098439_14	Pfam	PF01966	HD domain	HD
UHGV-0098439_14	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0098439_14	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0098439_14	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0098439_15	PHROG	phrog_14970	NA	unknown function
UHGV-0098439_15	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0098439_15	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0098439_15	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0098439_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0098439_16	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0098439_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0098439_17	PHROG	phrog_7566	NA	unknown function
UHGV-0098439_17	UniRef90	UniRef90_A0A417GG52	Phosphoenolpyruvate carboxykinase	NA
UHGV-0098439_17	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0098439_18	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0098439_18	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0098439_18	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0098439_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0098439_18	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0098439_19	Structural annotation	PF04703, MF_01909, NF033788, COG0640	NA	NA
UHGV-0098439_21	UniRef90	UniRef90_R7AV01	LexA_DNA_bind domain-containing protein	NA
UHGV-0098439_21	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0098439_21	Structural annotation	PF01726, MF_00732, NF008273, COG1321	NA	NA
UHGV-0098439_24	PHROG	phrog_15198	NA	unknown function
UHGV-0098439_24	UniRef90	UniRef90_UPI001BC026BF	NA	NA
UHGV-0098439_24	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0098439_24	Pfam	PF04448	NA	DUF551
UHGV-0098439_24	Structural annotation	NF041588	NA	NA
UHGV-0098439_25	PHROG	phrog_6568	NA	unknown function
UHGV-0098439_25	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0098439_26	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0098439_26	eggNOG-mapper	411902.CLOBOL_06327	NA	NA
UHGV-0098439_26	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0098439_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098439_27	UniRef90	UniRef90_UPI001BBBDD49	RNA polymerase subunit sigma-70	NA
UHGV-0098439_27	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0098439_27	Structural annotation	PF02996	NA	NA
UHGV-0098439_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0098439_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0098439_29	UniRef90	UniRef90_A0A3R6UIT1	Terminase small subunit	NA
UHGV-0098439_29	eggNOG-mapper	1321778.HMPREF1982_02686	Terminase Small Subunit	NA
UHGV-0098439_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0098439_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0098439_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0098439_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098439_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0098439_30	UniRef90	UniRef90_UPI000B896FAD	terminase family protein	NA
UHGV-0098439_30	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0098439_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098439_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0098439_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098439_31	UniRef90	UniRef90_R7AJB6	Phage minor capsid protein	NA
UHGV-0098439_31	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0098439_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098439_32	PHROG	phrog_25639	NA	unknown function
UHGV-0098439_32	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0098439_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098439_33	UniRef90	UniRef90_A0A416KE36	Minor capsid protein	NA
UHGV-0098439_33	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0098439_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098439_33	COG	COG2369	NA	NA
UHGV-0098439_35	PHROG	phrog_3675	NA	unknown function
UHGV-0098439_35	UniRef90	UniRef90_A0A3E2UCU7	Dihydrolipoyl dehydrogenase	NA
UHGV-0098439_35	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0098439_35	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0098439_35	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0098439_36	PHROG	phrog_774	NA	unknown function
UHGV-0098439_36	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0098439_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0098439_37	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0098439_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0098439_38	UniRef90	UniRef90_R6Z318	Phage major capsid protein	NA
UHGV-0098439_38	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0098439_38	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098439_39	PHROG	phrog_1378	NA	unknown function
UHGV-0098439_39	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0098439_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098439_40	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0098439_41	PHROG	phrog_8710	NA	unknown function
UHGV-0098439_41	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0098439_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0098439_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098439_42	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0098439_43	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0098439_43	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0098439_43	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0098439_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0098439_43	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0098439_44	PHROG	phrog_820	major tail protein	tail
UHGV-0098439_44	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0098439_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0098439_45	PHROG	phrog_8300	NA	unknown function
UHGV-0098439_45	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0098439_45	Structural annotation	PF06854	NA	NA
UHGV-0098439_46	PHROG	phrog_8355	NA	unknown function
UHGV-0098439_46	UniRef90	UniRef90_UPI000BA45828	Gp15 family bacteriophage protein	NA
UHGV-0098439_46	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0098439_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0098439_46	Structural annotation	PF06854	NA	NA
UHGV-0098439_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0098439_47	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0098439_47	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0098439_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0098439_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0098439_48	PHROG	phrog_1194	NA	unknown function
UHGV-0098439_48	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0098439_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0098439_49	PHROG	phrog_13879	NA	unknown function
UHGV-0098439_49	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0098439_49	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0098439_50	PHROG	phrog_18725	NA	unknown function
UHGV-0098439_50	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0098439_51	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0098439_52	PHROG	phrog_13589	NA	unknown function
UHGV-0098439_52	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0098439_52	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0098439_52	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0098439_53	Structural annotation	PF21253, NF038128, COG5156	NA	NA