UHGV-0098594

Genome information

Genome length 59,901 bps

CDS count 94

Completeness 99.69% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098594
vOTU ID	vOTU-014493
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228905
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.66
Jumbo phage	No

Genome content
Genome length	59,901 bps
GC content	40.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	87.00%
Average CDS length	556.76 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098594_1	PHROG	phrog_21718	NA	unknown function
UHGV-0098594_1	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0098594_1	Structural annotation	NF033819	NA	NA
UHGV-0098594_2	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0098594_3	PHROG	phrog_16490	NA	unknown function
UHGV-0098594_3	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0098594_4	PHROG	phrog_20016	NA	unknown function
UHGV-0098594_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0098594_4	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0098594_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0098594_5	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0098594_6	PHROG	phrog_3896	NA	unknown function
UHGV-0098594_6	UniRef90	UniRef90_E5RWT2	Srl	NA
UHGV-0098594_6	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0098594_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0098594_9	UniRef90	UniRef90_UPI00101B910B	Rha family transcriptional regulator	NA
UHGV-0098594_9	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-0098594_9	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0098594_9	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0098594_9	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0098594_10	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0098594_10	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0098594_11	PHROG	phrog_1233	NA	unknown function
UHGV-0098594_11	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0098594_11	Structural annotation	PF13058, COG2856	NA	NA
UHGV-0098594_14	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0098594_14	UniRef90	UniRef90_A0A3D5LSI5	Cro/Cl family transcriptional regulator	NA
UHGV-0098594_14	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098594_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0098594_14	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0098594_15	UniRef90	UniRef90_A0A3E3I233	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0098594_15	eggNOG-mapper	411490.ANACAC_03455	mRNA binding	NA
UHGV-0098594_15	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0098594_15	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0098594_15	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0098594_16	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0098594_16	UniRef90	UniRef90_A0A374IEC4	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0098594_16	eggNOG-mapper	411902.CLOBOL_06719	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0098594_16	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0098594_16	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0098594_16	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0098594_17	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0098594_24	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0098594_26	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0098594_26	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0098594_26	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0098594_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0098594_26	COG	COG5410	NA	NA
UHGV-0098594_26	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0098594_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098594_27	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0098594_27	Structural annotation	PF02996	NA	NA
UHGV-0098594_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0098594_28	UniRef90	UniRef90_A0A3R6ASF4	Phage portal protein	NA
UHGV-0098594_28	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0098594_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098594_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098594_29	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0098594_30	PHROG	phrog_909	major head protein	head and packaging
UHGV-0098594_30	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0098594_30	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0098594_31	PHROG	phrog_29	major head protein	head and packaging
UHGV-0098594_31	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0098594_31	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0098594_31	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0098594_31	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0098594_32	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0098594_32	Structural annotation	PF21169	NA	NA
UHGV-0098594_33	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0098594_34	PHROG	phrog_1863	NA	unknown function
UHGV-0098594_34	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0098594_35	PHROG	phrog_18218	NA	unknown function
UHGV-0098594_35	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0098594_35	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0098594_35	Structural annotation	PF06946	NA	NA
UHGV-0098594_36	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0098594_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0098594_37	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0098594_37	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0098594_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0098594_38	Structural annotation	PF05657	NA	NA
UHGV-0098594_39	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0098594_39	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0098594_42	PHROG	phrog_14030	NA	unknown function
UHGV-0098594_42	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0098594_42	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0098594_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0098594_42	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0098594_42	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0098594_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0098594_43	UniRef90	UniRef90_A0A0F0C7Q9	Chromosome partition protein Smc	NA
UHGV-0098594_43	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0098594_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0098594_44	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0098594_44	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0098594_44	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0098594_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0098594_45	PHROG	phrog_806	NA	unknown function
UHGV-0098594_45	UniRef90	UniRef90_A0A1C5MEC8	Telomeric repeat-binding factor 2	NA
UHGV-0098594_45	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0098594_45	Pfam	PF11611	NA	DUF4352
UHGV-0098594_45	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0098594_46	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0098594_46	UniRef90	UniRef90_A0A1Q6KK61	Bro-N domain-containing protein	NA
UHGV-0098594_46	eggNOG-mapper	742733.HMPREF9469_01810	AntA/AntB antirepressor	NA
UHGV-0098594_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0098594_46	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0098594_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0098594_46	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0098594_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0098594_47	UniRef90	UniRef90_UPI001CA4AEA6	phage antirepressor KilAC domain-containing protein	NA
UHGV-0098594_47	eggNOG-mapper	1414720.CBYM010000063_gene3453	Phage antirepressor protein KilAC domain	NA
UHGV-0098594_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0098594_47	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0098594_49	PHROG	phrog_1194	NA	unknown function
UHGV-0098594_49	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0098594_49	Pfam	PF20458	NA	DUF6711
UHGV-0098594_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0098594_50	PHROG	phrog_18190	NA	unknown function
UHGV-0098594_50	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0098594_50	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0098594_50	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0098594_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0098594_52	PHROG	phrog_17196	kinase	other
UHGV-0098594_52	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0098594_52	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0098594_54	UniRef90	UniRef90_A0A3R6F9H0	XRE family transcriptional regulator	NA
UHGV-0098594_54	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098594_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098594_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098594_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098594_59	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0098594_59	UniRef90	UniRef90_A0A2C1CA95	Rha family transcriptional regulator	NA
UHGV-0098594_59	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0098594_59	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0098594_59	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0098594_59	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0098594_59	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0098594_60	PHROG	phrog_6329	NA	unknown function
UHGV-0098594_60	UniRef90	UniRef90_A0A4U9RBR8	NA	NA
UHGV-0098594_60	eggNOG-mapper	1536774.H70357_24835	NA	NA
UHGV-0098594_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098594_62	PHROG	phrog_26861	NA	unknown function
UHGV-0098594_62	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-0098594_62	eggNOG-mapper	1256908.HMPREF0373_01719	NA	NA
UHGV-0098594_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098594_62	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0098594_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098594_62	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0098594_64	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0098594_64	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098594_64	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0098594_64	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0098594_64	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0098594_64	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098594_64	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0098594_66	PHROG	phrog_4433	NA	unknown function
UHGV-0098594_66	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0098594_66	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0098594_67	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0098594_69	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098594_69	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0098594_69	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0098594_69	Pfam	PF03837	RecT family	RecT
UHGV-0098594_69	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0098594_70	PHROG	phrog_25456	NA	unknown function
UHGV-0098594_72	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0098594_72	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0098594_72	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-0098594_72	eggNOG-mapper	411154.GFO_2483	Metallo-beta-lactamase superfamily	NA
UHGV-0098594_72	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0098594_72	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0098594_72	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0098594_74	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0098594_74	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0098594_74	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0098594_74	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0098594_74	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0098594_75	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0098594_75	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0098594_75	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0098594_75	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0098594_75	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0098594_75	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0098594_76	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0098594_76	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0098594_76	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0098594_76	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0098594_76	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0098594_76	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0098594_76	COG	COG0305	Replicative DNA helicase	NA
UHGV-0098594_76	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0098594_79	Structural annotation	PF17399	NA	NA
UHGV-0098594_81	PHROG	phrog_21026	NA	unknown function
UHGV-0098594_82	PHROG	phrog_15198	NA	unknown function
UHGV-0098594_82	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0098594_82	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0098594_82	Pfam	PF04448	NA	DUF551
UHGV-0098594_82	Structural annotation	NF041588	NA	NA
UHGV-0098594_83	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-0098594_83	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0098594_84	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0098594_84	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0098594_86	PHROG	phrog_8684	NA	unknown function
UHGV-0098594_86	UniRef90	UniRef90_A0A414R9Z6	YopX domain-containing protein	NA
UHGV-0098594_86	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0098594_86	Pfam	PF09643	YopX protein	YopX
UHGV-0098594_86	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0098594_87	PHROG	phrog_20593	NA	unknown function
UHGV-0098594_88	PHROG	phrog_874	NA	unknown function
UHGV-0098594_88	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0098594_88	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0098594_91	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0098594_91	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0098594_91	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0098594_91	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0098594_91	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0098594_91	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0098594_92	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0098594_92	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0098594_92	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098594_92	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0098594_92	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0098594_92	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0098594_92	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098594_92	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0098594_94	eggNOG-mapper	411459.RUMOBE_01111	NA	NA