UHGV-0098795

Genome information

Genome length 37,255 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098795
vOTU ID	vOTU-014554
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230083
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.96
Jumbo phage	No

Genome content
Genome length	37,255 bps
GC content	27.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.26%
Average CDS length	496.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098795_1	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098795_1	UniRef90	UniRef90_A0A1I2QJY1	AP2 domain-containing protein	NA
UHGV-0098795_1	eggNOG-mapper	1196324.A374_08819	NA	NA
UHGV-0098795_1	AcrCatalog	cluster_10901	NA	NA
UHGV-0098795_1	Pfam	PF00847	AP2 domain	AP2
UHGV-0098795_1	Structural annotation	PF00847	NA	NA
UHGV-0098795_6	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0098795_6	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0098795_6	UniRef90	UniRef90_R6N538	HicB-like domain-containing protein	NA
UHGV-0098795_6	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0098795_6	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0098795_6	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0098795_6	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0098795_7	eggNOG-mapper	411469.EUBHAL_02628	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0098795_7	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0098795_7	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0098795_9	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-0098795_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098795_9	Structural annotation	PF01381, NF010465, COG1476	NA	NA
UHGV-0098795_10	AcrCatalog	cluster_94195	NA	NA
UHGV-0098795_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098795_11	PHROG	phrog_95	integrase	integration and excision
UHGV-0098795_11	UniRef90	UniRef90_A0A413X573	Zn_ribbon_recom domain-containing protein	NA
UHGV-0098795_11	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0098795_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0098795_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098795_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098795_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0098795_12	UniRef90	UniRef90_UPI000A9B3D7E	recombinase family protein	NA
UHGV-0098795_12	eggNOG-mapper	272563.CD630_29520	Resolvase, N terminal domain	NA
UHGV-0098795_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0098795_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098795_12	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0098795_13	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0098795_13	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098795_13	UniRef90	UniRef90_R5JDG5	HSDR_N_2 domain-containing protein	NA
UHGV-0098795_13	eggNOG-mapper	1511.CLOST_1563	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0098795_13	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0098795_13	COG	COG4748	NA	NA
UHGV-0098795_13	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0098795_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098795_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098795_14	UniRef90	UniRef90_R7FH14	LexA repressor family protein	NA
UHGV-0098795_14	eggNOG-mapper	742743.HMPREF9453_00588	Peptidase S24-like	NA
UHGV-0098795_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098795_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098795_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0098795_14	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0098795_17	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0098795_17	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0098795_17	UniRef90	UniRef90_R7FI06	MazG family protein	NA
UHGV-0098795_17	eggNOG-mapper	796606.BMMGA3_09420	Transcriptional regulator, AbrB family	NA
UHGV-0098795_17	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0098795_17	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0098795_17	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0098795_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0098795_19	UniRef90	UniRef90_A0A1C5VJZ4	Siphovirus Gp157	NA
UHGV-0098795_19	eggNOG-mapper	536232.CLM_2568	Siphovirus Gp157	NA
UHGV-0098795_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0098795_19	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0098795_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098795_20	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0098795_20	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0098795_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-0098795_20	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0098795_20	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0098795_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0098795_21	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0098795_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0098795_21	Structural annotation	PF05772	NA	NA
UHGV-0098795_22	PHROG	phrog_7566	NA	unknown function
UHGV-0098795_23	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098795_23	UniRef90	UniRef90_A0A345AQ26	Replication initiation protein	NA
UHGV-0098795_23	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0098795_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0098795_23	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0098795_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0098795_26	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098795_26	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0098795_26	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0098795_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098795_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0098795_30	PHROG	phrog_98	NA	unknown function
UHGV-0098795_30	UniRef90	UniRef90_UPI001C553E1E	YopX family protein	NA
UHGV-0098795_30	eggNOG-mapper	552525.B5LPP1_9CAUD	YopX protein	NA
UHGV-0098795_30	Pfam	PF09643	YopX protein	YopX
UHGV-0098795_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0098795_31	Pfam	PF04423	Rad50 zinc hook motif	Rad50_zn_hook
UHGV-0098795_38	eggNOG-mapper	1410626.JHXB01000008_gene1183	NA	NA
UHGV-0098795_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0098795_40	Structural annotation	PF07374, MF_00674, TIGR02950, COG2739	NA	NA
UHGV-0098795_42	PHROG	phrog_8680	NA	unknown function
UHGV-0098795_42	UniRef90	UniRef90_A0A417QFZ0	NA	NA
UHGV-0098795_42	eggNOG-mapper	1229517.AMFD01000023_gene1324	NA	NA
UHGV-0098795_42	Pfam	PF14386	NA	DUF4417
UHGV-0098795_42	Structural annotation	PF14386	NA	NA
UHGV-0098795_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098795_45	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0098795_45	UniRef90	UniRef90_R6XV26	Phage terminase	NA
UHGV-0098795_45	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0098795_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098795_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0098795_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098795_45	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0098795_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098795_46	UniRef90	UniRef90_F2JPK0	Bacteriophage portal protein, SPP1 Gp6-like protein	NA
UHGV-0098795_46	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0098795_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098795_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098795_47	UniRef90	UniRef90_K1TV07	Phage minor capsid protein 2 (Fragment)	NA
UHGV-0098795_47	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0098795_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098795_47	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0098795_47	COG	COG2369	NA	NA
UHGV-0098795_47	Structural annotation	PF06152	NA	NA
UHGV-0098795_49	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0098795_49	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0098795_49	eggNOG-mapper	1078085.HMPREF1210_01146	Phage minor structural protein GP20	NA
UHGV-0098795_49	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0098795_49	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0098795_50	PHROG	phrog_283	major head protein	head and packaging
UHGV-0098795_50	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0098795_50	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0098795_50	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0098795_50	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098795_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098795_52	PHROG	phrog_3366	NA	unknown function
UHGV-0098795_52	Pfam	PF20536	NA	DUF6751
UHGV-0098795_52	Structural annotation	PF20536	NA	NA
UHGV-0098795_53	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098795_53	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0098795_53	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0098795_54	PHROG	phrog_3266	tail completion	connector
UHGV-0098795_54	UniRef90	UniRef90_UPI00016BD3C1	chloramphenicol resistance protein	NA
UHGV-0098795_54	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0098795_54	Structural annotation	PF12691	NA	NA
UHGV-0098795_55	PHROG	phrog_3099	NA	unknown function
UHGV-0098795_55	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0098795_55	Structural annotation	PF13715, PF08813, TIGR02126, TIGR04134, COG5437	NA	NA
UHGV-0098795_56	PHROG	phrog_4450	NA	unknown function
UHGV-0098795_56	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0098795_56	Pfam	PF20378	NA	DUF6673
UHGV-0098795_57	PHROG	phrog_706	NA	unknown function
UHGV-0098795_57	UniRef90	UniRef90_UPI00189B9FA2	bacteriophage Gp15 family protein	NA
UHGV-0098795_57	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-0098795_57	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0098795_57	Structural annotation	PF06854	NA	NA
UHGV-0098795_58	PHROG	phrog_10772	NA	unknown function
UHGV-0098795_58	UniRef90	UniRef90_A0A357TQM7	TM2 domain-containing protein	NA
UHGV-0098795_58	eggNOG-mapper	411473.RUMCAL_03485	TM2 domain	NA
UHGV-0098795_58	Pfam	PF05154	TM2 domain	TM2
UHGV-0098795_58	COG	COG2314	NA	NA
UHGV-0098795_58	Structural annotation	PF05154, COG2314	NA	NA
UHGV-0098795_59	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0098795_59	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0098795_60	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0098795_60	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0098795_60	COG	COG1511	NA	NA
UHGV-0098795_60	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0098795_61	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0098795_64	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0098795_64	Structural annotation	TIGR03711	NA	NA
UHGV-0098795_65	PHROG	phrog_2310	NA	unknown function
UHGV-0098795_65	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0098795_66	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0098795_66	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-0098795_67	PHROG	phrog_881	holin	lysis
UHGV-0098795_67	UniRef90	UniRef90_A0A6I2QY13	Holin	NA
UHGV-0098795_67	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0098795_67	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0098795_68	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0098795_68	PHROG	phrog_435	endolysin	lysis
UHGV-0098795_68	UniRef90	UniRef90_UPI000E421BBF	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098795_68	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098795_68	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0098795_68	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098795_68	Structural annotation	PF01183, PF18342, COG3757	NA	NA