UHGV-0098811

Genome information

Genome length 53,096 bps

CDS count 88

Completeness 92.09% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098811
vOTU ID	vOTU-065383
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_220895
BioSample	SAMEA3541512
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.74
Jumbo phage	No

Genome content
Genome length	53,096 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	86.62%
Average CDS length	527.86 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098811_1	KOfam	K14059	int; integrase	NA
UHGV-0098811_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0098811_1	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0098811_1	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0098811_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098811_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098811_1	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0098811_2	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0098811_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0098811_2	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0098811_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0098811_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0098811_3	UniRef90	UniRef90_F7JKD7	Methyltransferase	NA
UHGV-0098811_3	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0098811_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0098811_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0098811_3	COG	COG0863	DNA modification methylase	NA
UHGV-0098811_3	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0098811_5	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0098811_11	PHROG	phrog_20593	NA	unknown function
UHGV-0098811_13	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0098811_13	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0098811_14	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0098811_15	PHROG	phrog_22292	NA	unknown function
UHGV-0098811_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0098811_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0098811_18	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0098811_18	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0098811_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0098811_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0098811_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0098811_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0098811_19	PHROG	phrog_11769	NA	unknown function
UHGV-0098811_19	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0098811_19	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0098811_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0098811_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0098811_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0098811_20	PHROG	phrog_19106	NA	unknown function
UHGV-0098811_20	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0098811_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0098811_20	Structural annotation	TIGR01453	NA	NA
UHGV-0098811_21	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098811_21	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-0098811_21	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0098811_23	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0098811_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0098811_23	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0098811_23	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0098811_23	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0098811_23	dbAPIS	APIS058	NA	NA
UHGV-0098811_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0098811_23	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0098811_24	PHROG	phrog_25456	NA	unknown function
UHGV-0098811_25	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098811_25	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0098811_25	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0098811_25	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0098811_27	PHROG	phrog_2164	NA	unknown function
UHGV-0098811_27	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0098811_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0098811_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098811_31	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0098811_31	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0098811_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-0098811_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0098811_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0098811_32	PHROG	phrog_26861	NA	unknown function
UHGV-0098811_32	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0098811_32	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0098811_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098811_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098811_32	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0098811_37	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0098811_37	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0098811_37	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0098811_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0098811_37	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0098811_37	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0098811_38	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0098811_38	UniRef90	UniRef90_UPI00097FFF01	ORF6N domain-containing protein	NA
UHGV-0098811_38	eggNOG-mapper	476272.RUMHYD_03311	ORF6C domain	NA
UHGV-0098811_38	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0098811_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0098811_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098811_41	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0098811_41	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0098811_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0098811_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098811_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098811_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098811_42	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0098811_42	Structural annotation	NF040910	NA	NA
UHGV-0098811_43	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0098811_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0098811_46	PHROG	phrog_17196	kinase	other
UHGV-0098811_46	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0098811_46	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0098811_47	PHROG	phrog_18190	NA	unknown function
UHGV-0098811_47	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0098811_47	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0098811_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0098811_47	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0098811_48	PHROG	phrog_1194	NA	unknown function
UHGV-0098811_48	Pfam	PF20458	NA	DUF6711
UHGV-0098811_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0098811_49	PHROG	phrog_806	NA	unknown function
UHGV-0098811_49	UniRef90	UniRef90_UPI001D08E833	NA	NA
UHGV-0098811_49	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0098811_49	Pfam	PF11611	NA	DUF4352
UHGV-0098811_49	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0098811_50	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0098811_50	UniRef90	UniRef90_A0A1G5JI33	Ig-like domain (Group 2) (Fragment)	NA
UHGV-0098811_50	eggNOG-mapper	1280681.AUJZ01000002_gene1435	Bacterial Ig-like domain 2	NA
UHGV-0098811_50	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0098811_50	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0098811_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0098811_51	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0098811_51	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0098811_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0098811_51	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0098811_52	PHROG	phrog_14030	NA	unknown function
UHGV-0098811_52	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0098811_52	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0098811_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0098811_55	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0098811_55	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0098811_56	Structural annotation	PF05657	NA	NA
UHGV-0098811_57	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0098811_57	AcrCatalog	cluster_24841	NA	NA
UHGV-0098811_58	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0098811_59	PHROG	phrog_443	holin	lysis
UHGV-0098811_59	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0098811_59	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0098811_59	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0098811_59	Structural annotation	PF16945	NA	NA
UHGV-0098811_60	PHROG	phrog_4105	NA	unknown function
UHGV-0098811_60	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0098811_61	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0098811_62	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0098811_62	Structural annotation	PF21169	NA	NA
UHGV-0098811_63	PHROG	phrog_29	major head protein	head and packaging
UHGV-0098811_63	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0098811_63	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0098811_63	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0098811_63	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0098811_64	PHROG	phrog_909	major head protein	head and packaging
UHGV-0098811_64	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0098811_65	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0098811_66	PHROG	phrog_64	portal protein	head and packaging
UHGV-0098811_66	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0098811_66	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0098811_66	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0098811_66	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098811_67	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098811_67	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0098811_67	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0098811_67	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0098811_67	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0098811_68	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0098811_68	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0098811_68	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0098811_68	COG	COG5410	NA	NA
UHGV-0098811_68	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0098811_70	eggNOG-mapper	1282664.H354_06631	NA	NA
UHGV-0098811_73	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0098811_74	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0098811_74	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0098811_74	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0098811_74	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0098811_74	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0098811_74	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0098811_75	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0098811_76	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0098811_77	Structural annotation	PF19923	NA	NA
UHGV-0098811_80	PHROG	phrog_31631	NA	unknown function
UHGV-0098811_82	Structural annotation	PF13973	NA	NA
UHGV-0098811_85	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0098811_85	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0098811_85	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0098811_86	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0098811_86	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0098811_86	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0098811_86	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0098811_86	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0098811_86	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA