UHGV-0098819

Genome information

Genome length 37,548 bps

CDS count 46

Completeness 91.23% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098819
vOTU ID	vOTU-067688
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_213114
BioSample	SAMEA3541513
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.48
Jumbo phage	No

Genome content
Genome length	37,548 bps
GC content	39.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.27%
Average CDS length	756.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098819_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0098819_1	PHROG	phrog_435	endolysin	lysis
UHGV-0098819_1	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098819_1	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0098819_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0098819_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098819_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0098819_2	PHROG	phrog_443	holin	lysis
UHGV-0098819_2	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-0098819_2	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0098819_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0098819_2	Structural annotation	PF16945	NA	NA
UHGV-0098819_3	PHROG	phrog_937	hemolysin	other
UHGV-0098819_3	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0098819_4	PHROG	phrog_2566	NA	unknown function
UHGV-0098819_4	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0098819_5	PHROG	phrog_16267	NA	unknown function
UHGV-0098819_5	UniRef90	UniRef90_UPI00156FBBAC	tail fiber domain-containing protein	NA
UHGV-0098819_5	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0098819_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0098819_5	COG	COG4926	Phage-related protein	NA
UHGV-0098819_6	PHROG	phrog_1401	NA	unknown function
UHGV-0098819_6	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0098819_6	Structural annotation	PF07761	NA	NA
UHGV-0098819_7	PHROG	phrog_1194	NA	unknown function
UHGV-0098819_7	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0098819_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0098819_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0098819_8	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0098819_8	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0098819_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0098819_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0098819_9	PHROG	phrog_8355	NA	unknown function
UHGV-0098819_9	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0098819_9	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0098819_10	PHROG	phrog_8300	NA	unknown function
UHGV-0098819_10	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0098819_10	Structural annotation	PF06854	NA	NA
UHGV-0098819_11	PHROG	phrog_820	major tail protein	tail
UHGV-0098819_11	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0098819_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0098819_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0098819_12	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0098819_12	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0098819_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0098819_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0098819_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0098819_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0098819_14	PHROG	phrog_8710	NA	unknown function
UHGV-0098819_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0098819_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0098819_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0098819_15	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0098819_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0098819_16	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0098819_16	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0098819_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098819_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0098819_17	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0098819_18	Structural annotation	PF20873	NA	NA
UHGV-0098819_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0098819_20	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0098819_20	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0098819_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0098819_20	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0098819_20	Structural annotation	PF06152	NA	NA
UHGV-0098819_21	PHROG	phrog_25639	NA	unknown function
UHGV-0098819_21	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0098819_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0098819_22	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0098819_22	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0098819_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0098819_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098819_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0098819_23	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0098819_23	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0098819_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098819_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0098819_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0098819_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0098819_24	UniRef90	UniRef90_A0A417V811	Terminase small subunit	NA
UHGV-0098819_24	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0098819_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0098819_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0098819_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0098819_25	UniRef90	UniRef90_A0A374ABG0	NA	NA
UHGV-0098819_25	eggNOG-mapper	693746.OBV_43160	NA	NA
UHGV-0098819_25	Pfam	PF10987	NA	DUF2806
UHGV-0098819_25	Structural annotation	PF10987, TIGR03899	NA	NA
UHGV-0098819_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098819_26	UniRef90	UniRef90_A0A1Q2C402	Sigma70_r4 domain-containing protein	NA
UHGV-0098819_26	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0098819_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0098819_26	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0098819_26	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0098819_27	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-0098819_28	PHROG	phrog_31515	NA	unknown function
UHGV-0098819_28	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0098819_29	PHROG	phrog_17690	NA	unknown function
UHGV-0098819_29	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0098819_29	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0098819_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0098819_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0098819_30	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0098819_30	eggNOG-mapper	469618.FVAG_01298	SNF2 family N-terminal domain	NA
UHGV-0098819_30	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0098819_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0098819_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0098819_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0098819_30	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0098819_31	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098819_31	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0098819_31	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0098819_31	Structural annotation	PF18741	NA	NA
UHGV-0098819_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0098819_32	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0098819_32	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0098819_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0098819_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0098819_32	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0098819_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0098819_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0098819_33	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0098819_33	eggNOG-mapper	1449126.JQKL01000006_gene840	DNA polymerase	NA
UHGV-0098819_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0098819_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0098819_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0098819_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0098819_34	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0098819_34	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0098819_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0098819_34	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0098819_35	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098819_35	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0098819_35	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0098819_35	Pfam	PF10926	NA	DUF2800
UHGV-0098819_35	COG	COG2887	RecB family exonuclease	NA
UHGV-0098819_35	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0098819_36	PHROG	phrog_18562	NA	unknown function
UHGV-0098819_36	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0098819_40	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0098819_41	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0098819_41	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-0098819_41	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098819_41	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0098819_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098819_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098819_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0098819_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0098819_42	UniRef90	UniRef90_A0A374AM30	XRE family transcriptional regulator	NA
UHGV-0098819_42	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0098819_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098819_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0098819_42	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0098819_43	PHROG	phrog_87	metallo-protease	other
UHGV-0098819_43	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0098819_43	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0098819_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0098819_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0098819_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0098819_44	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-0098819_44	eggNOG-mapper	397290.C810_01424	NA	NA
UHGV-0098819_45	KOfam	K14059	int; integrase	NA
UHGV-0098819_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0098819_45	UniRef90	UniRef90_B0NZG9	Site-specific recombinase, phage integrase family	NA
UHGV-0098819_45	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0098819_45	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0098819_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098819_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098819_45	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0098819_46	eggNOG-mapper	1235790.C805_01619	Cytoplasmic, score 8.87	NA
UHGV-0098819_46	Pfam	PF14057	GGGtGRT protein	GGGtGRT