UHGV-0098917

Genome information

Genome length 25,030 bps

CDS count 38

Completeness 65.79% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098917
vOTU ID	vOTU-042149
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210748
BioSample	SAMEA3449359
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.33
Jumbo phage	No

Genome content
Genome length	25,030 bps
GC content	57.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	94.68%
Average CDS length	626.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098917_1	KOfam	K14059	int; integrase	NA
UHGV-0098917_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0098917_1	UniRef90	UniRef90_A0A4D7AYG4	Site-specific integrase	NA
UHGV-0098917_1	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0098917_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098917_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098917_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0098917_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0098917_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0098917_3	UniRef90	UniRef90_UPI001C119F77	helix-turn-helix domain-containing protein	NA
UHGV-0098917_3	eggNOG-mapper	693746.OBV_01960	Peptidase S24-like	NA
UHGV-0098917_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0098917_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0098917_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0098917_3	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0098917_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0098917_4	UniRef90	UniRef90_A0A357NGY1	XRE family transcriptional regulator	NA
UHGV-0098917_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0098917_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0098917_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0098917_5	UniRef90	UniRef90_UPI001AFEC698	Bro-N domain-containing protein	NA
UHGV-0098917_5	eggNOG-mapper	411465.PEPMIC_00041	BRO family, N-terminal domain protein	NA
UHGV-0098917_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0098917_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0098917_6	UniRef90	UniRef90_A0A3D3FA36	Phage antirepressor	NA
UHGV-0098917_6	eggNOG-mapper	1122918.KB907248_gene4521	Phage regulatory protein	NA
UHGV-0098917_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0098917_7	Structural annotation	PF12728	NA	NA
UHGV-0098917_9	PHROG	phrog_22529	NA	unknown function
UHGV-0098917_9	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0098917_9	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-0098917_9	Pfam	PF06725	3D domain	3D
UHGV-0098917_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0098917_11	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098917_11	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0098917_11	COG	COG2887	RecB family exonuclease	NA
UHGV-0098917_11	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0098917_12	PHROG	phrog_10048	NA	unknown function
UHGV-0098917_12	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0098917_12	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0098917_13	UniRef90	UniRef90_UPI001C100C37	single-stranded DNA-binding protein	NA
UHGV-0098917_13	Structural annotation	PF00436, MF_00984, NF006297, COG0629	NA	NA
UHGV-0098917_14	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098917_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0098917_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098917_15	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0098917_15	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0098917_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0098917_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098917_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0098917_17	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0098917_17	PHROG	phrog_17284	NA	unknown function
UHGV-0098917_17	UniRef90	UniRef90_A0A1Q6JM75	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098917_17	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0098917_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0098917_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0098917_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098917_17	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0098917_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0098917_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0098917_18	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0098917_18	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0098917_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0098917_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0098917_19	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098917_19	UniRef90	UniRef90_UPI0018AC8137	GIY-YIG nuclease family protein	NA
UHGV-0098917_19	eggNOG-mapper	1476973.JMMB01000007_gene2015	GIY-YIG type nucleases (URI domain)	NA
UHGV-0098917_19	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0098917_19	Pfam	PF08279	HTH domain	HTH_11
UHGV-0098917_19	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0098917_19	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0098917_19	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0098917_19	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0098917_20	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0098917_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0098917_22	Structural annotation	PF10781	NA	NA
UHGV-0098917_23	PHROG	phrog_3136	NA	unknown function
UHGV-0098917_23	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0098917_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0098917_23	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0098917_28	Structural annotation	COG1724	NA	NA
UHGV-0098917_29	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0098917_29	UniRef90	UniRef90_A0A7X3DIU0	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0098917_29	eggNOG-mapper	1408321.JNJD01000013_gene1579	HicB family	NA
UHGV-0098917_29	Pfam	PF05534	HicB family	HicB
UHGV-0098917_29	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0098917_30	UniRef90	UniRef90_UPI001957E8CB	protein-export chaperone SecB	NA
UHGV-0098917_30	eggNOG-mapper	397290.C810_00912	NA	NA
UHGV-0098917_30	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0098917_31	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0098917_31	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0098917_31	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0098917_32	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0098917_33	PHROG	phrog_21357	endolysin	lysis
UHGV-0098917_33	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0098917_33	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0098917_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0098917_33	COG	COG1388	LysM repeat	NA
UHGV-0098917_33	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0098917_34	UniRef90	UniRef90_A0A437S4D3	NAGPA domain-containing protein	NA
UHGV-0098917_34	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0098917_35	PHROG	phrog_199	holin	lysis
UHGV-0098917_35	UniRef90	UniRef90_UPI001C033395	phage holin family protein	NA
UHGV-0098917_35	eggNOG-mapper	693746.OBV_24950	Bacteriophage holin family	NA
UHGV-0098917_35	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0098917_35	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0098917_35	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0098917_37	UniRef90	UniRef90_A0A1Y3S8H4	Sigma70_r4 domain-containing protein	NA
UHGV-0098917_37	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0098917_37	Pfam	PF04297	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
UHGV-0098917_37	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0098917_37	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0098917_37	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA