UHGV-0098953

Genome information

Genome length 39,911 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098953
vOTU ID	vOTU-012821
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_206754
BioSample	SAMEA3449292
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.34
Jumbo phage	No

Genome content
Genome length	39,911 bps
GC content	57.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	88.29%
Average CDS length	609.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098953_2	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0098953_2	Structural annotation	PF11417	NA	NA
UHGV-0098953_3	UniRef90	UniRef90_A0A4D7AYE9	Single-stranded DNA-binding protein	NA
UHGV-0098953_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098953_3	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0098953_4	PHROG	phrog_10048	NA	unknown function
UHGV-0098953_4	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0098953_4	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0098953_5	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098953_5	UniRef90	UniRef90_UPI00058C5410	PD-(D/E)XK nuclease family protein	NA
UHGV-0098953_5	COG	COG2887	RecB family exonuclease	NA
UHGV-0098953_5	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0098953_7	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0098953_10	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0098953_11	Structural annotation	PF12728	NA	NA
UHGV-0098953_12	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0098953_12	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0098953_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098953_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098953_14	UniRef90	UniRef90_A0A7X9EDY6	Helix-turn-helix transcriptional regulator	NA
UHGV-0098953_14	eggNOG-mapper	1688.BCUN_1339	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098953_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0098953_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0098953_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0098953_15	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0098953_15	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0098953_15	eggNOG-mapper	1497679.EP56_05520	Helix-turn-helix	NA
UHGV-0098953_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0098953_15	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0098953_15	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0098953_16	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0098953_16	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0098953_17	KOfam	K14059	int; integrase	NA
UHGV-0098953_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0098953_17	UniRef90	UniRef90_A0A4D7AYG4	Site-specific integrase	NA
UHGV-0098953_17	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0098953_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098953_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098953_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0098953_18	Structural annotation	PF17917	NA	NA
UHGV-0098953_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098953_19	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0098953_19	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0098953_19	Structural annotation	PF17375	NA	NA
UHGV-0098953_20	PHROG	phrog_15863	NA	unknown function
UHGV-0098953_20	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0098953_20	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0098953_20	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0098953_20	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0098953_22	eggNOG-mapper	693746.OBV_01760	NA	NA
UHGV-0098953_23	eggNOG-mapper	693746.OBV_01750	NA	NA
UHGV-0098953_25	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0098953_25	Structural annotation	PF11650	NA	NA
UHGV-0098953_26	UniRef90	UniRef90_A0A4D7B2L2	Cysteine-rich KTR domain-containing protein	NA
UHGV-0098953_26	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0098953_26	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0098953_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0098953_28	UniRef90	UniRef90_K1TJJ5	Gp7 (Fragment)	NA
UHGV-0098953_28	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0098953_28	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0098953_28	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0098953_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0098953_29	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0098953_29	UniRef90	UniRef90_K1SF61	Terminase-like protein (Fragment)	NA
UHGV-0098953_29	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0098953_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0098953_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0098953_30	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0098953_30	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0098953_30	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0098953_31	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0098953_32	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098953_32	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0098953_32	Structural annotation	PF17375	NA	NA
UHGV-0098953_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0098953_33	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0098953_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0098953_34	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0098953_34	PHROG	phrog_819	tail protein	tail
UHGV-0098953_34	UniRef90	UniRef90_UPI001F4CFECE	collagen-like protein	NA
UHGV-0098953_34	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0098953_35	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0098953_35	UniRef90	UniRef90_K1UI43	NA	NA
UHGV-0098953_35	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0098953_35	Pfam	PF19789	NA	DUF6273
UHGV-0098953_35	Structural annotation	PF19789	NA	NA
UHGV-0098953_36	Structural annotation	PF02973	NA	NA
UHGV-0098953_37	PHROG	phrog_37900	NA	unknown function
UHGV-0098953_37	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0098953_37	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0098953_37	Pfam	PF19789	NA	DUF6273
UHGV-0098953_37	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0098953_37	Structural annotation	PF19789	NA	NA
UHGV-0098953_39	PHROG	phrog_199	holin	lysis
UHGV-0098953_39	UniRef90	UniRef90_K1UL76	Holin, toxin secretion/phage lysis	NA
UHGV-0098953_39	eggNOG-mapper	411467.BACCAP_00280	Bacteriophage holin family	NA
UHGV-0098953_39	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0098953_39	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0098953_39	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0098953_39	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0098953_40	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0098953_40	PHROG	phrog_18955	NA	unknown function
UHGV-0098953_40	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0098953_40	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0098953_40	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0098953_40	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0098953_40	COG	COG3108	NA	NA
UHGV-0098953_40	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0098953_41	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0098953_42	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0098953_42	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0098953_42	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0098953_46	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0098953_46	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0098953_47	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0098953_47	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0098953_47	eggNOG-mapper	1118054.CAGW01000016_gene4545	PucR C-terminal helix-turn-helix domain	NA
UHGV-0098953_47	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0098953_47	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0098953_47	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0098953_48	UniRef90	UniRef90_A0A845MZZ9	NA	NA
UHGV-0098953_50	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0098953_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0098953_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0098953_52	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0098953_52	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0098953_52	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0098953_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0098953_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0098953_52	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0098953_53	PHROG	phrog_474	phosphofructokinase	other
UHGV-0098953_53	UniRef90	UniRef90_A0A1Q6KPW7	NA	NA
UHGV-0098953_53	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0098953_53	Pfam	PF19905	NA	DUF6378
UHGV-0098953_55	PHROG	phrog_37344	NA	unknown function
UHGV-0098953_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0098953_56	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0098953_56	UniRef90	UniRef90_A0A7X9D805	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0098953_56	eggNOG-mapper	94624.Bpet0972	Holliday junction resolvase	NA
UHGV-0098953_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0098953_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0098953_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA