UHGV-0098977

Genome information

Genome length 41,123 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098977
vOTU ID	vOTU-062512
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221893
BioSample	SAMEA3541562
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.22
Jumbo phage	No

Genome content
Genome length	41,123 bps
GC content	45.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.64%
Average CDS length	649.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098977_1	KOfam	K00147	proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]	NA
UHGV-0098977_1	PHROG	phrog_13417	NA	unknown function
UHGV-0098977_1	UniRef90	UniRef90_K1V7H3	Gamma-glutamyl phosphate reductase (Fragment)	NA
UHGV-0098977_1	eggNOG-mapper	1408437.JNJN01000022_gene2158	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	NA
UHGV-0098977_1	COG	COG0014	Gamma-glutamyl phosphate reductase	NA
UHGV-0098977_3	UniRef90	UniRef90_R6CDG9	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0098977_3	eggNOG-mapper	658088.HMPREF0987_00181	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0098977_3	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0098977_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0098977_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0098977_4	UniRef90	UniRef90_A0A1C6E499	DNA-invertase hin	NA
UHGV-0098977_4	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0098977_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0098977_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0098977_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0098977_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0098977_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0098977_5	PHROG	phrog_37898	NA	unknown function
UHGV-0098977_5	UniRef90	UniRef90_UPI000E434E8B	NA	NA
UHGV-0098977_5	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-0098977_5	Pfam	PF10387	NA	DUF2442
UHGV-0098977_5	Structural annotation	PF10387	NA	NA
UHGV-0098977_6	eggNOG-mapper	180332.JTGN01000007_gene3629	NA	NA
UHGV-0098977_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0098977_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0098977_7	UniRef90	UniRef90_A0A3D4RBY0	XRE family transcriptional regulator	NA
UHGV-0098977_7	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0098977_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0098977_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0098977_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0098977_15	PHROG	phrog_34107	NA	unknown function
UHGV-0098977_15	eggNOG-mapper	411459.RUMOBE_01761	NA	NA
UHGV-0098977_16	eggNOG-mapper	411470.RUMGNA_00195	NA	NA
UHGV-0098977_17	PHROG	phrog_12453	NA	unknown function
UHGV-0098977_17	Pfam	PF21779	NA	DUF6874
UHGV-0098977_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0098977_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0098977_18	UniRef90	UniRef90_UPI001C029164	DNA cytosine methyltransferase	NA
UHGV-0098977_18	eggNOG-mapper	742741.HMPREF9475_00411	C-5 cytosine-specific DNA methylase	NA
UHGV-0098977_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0098977_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0098977_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0098977_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0098977_18	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0098977_19	PHROG	phrog_31560	NA	unknown function
UHGV-0098977_19	eggNOG-mapper	585501.HMPREF6123_0413	NA	NA
UHGV-0098977_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0098977_22	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0098977_22	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA
UHGV-0098977_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0098977_24	PHROG	phrog_824	NA	unknown function
UHGV-0098977_24	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0098977_24	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0098977_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0098977_25	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0098977_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0098977_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0098977_26	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0098977_26	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0098977_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-0098977_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0098977_26	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0098977_27	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0098977_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0098977_28	PHROG	phrog_15982	NA	unknown function
UHGV-0098977_28	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0098977_28	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0098977_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0098977_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0098977_28	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0098977_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0098977_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0098977_30	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0098977_30	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0098977_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0098977_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0098977_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0098977_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0098977_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0098977_32	PHROG	phrog_8684	NA	unknown function
UHGV-0098977_32	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0098977_32	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0098977_32	Pfam	PF09643	YopX protein	YopX
UHGV-0098977_32	Pfam	PF04448	NA	DUF551
UHGV-0098977_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0098977_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0098977_34	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0098977_34	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0098977_34	Pfam	PF07374	NA	DUF1492
UHGV-0098977_34	Structural annotation	PF04545	NA	NA
UHGV-0098977_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0098977_35	UniRef90	UniRef90_A0A1C6DZR4	HNH endonuclease	NA
UHGV-0098977_35	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0098977_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0098977_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0098977_35	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0098977_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0098977_37	UniRef90	UniRef90_A0A1C6DZH3	Phage terminase-like protein, large subunit	NA
UHGV-0098977_37	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0098977_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0098977_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0098977_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0098977_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0098977_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0098977_38	UniRef90	UniRef90_A0A1C6E0D8	Phage portal protein, HK97 family	NA
UHGV-0098977_38	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0098977_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0098977_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0098977_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0098977_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0098977_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0098977_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0098977_39	UniRef90	UniRef90_A0A1C6DZF0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0098977_39	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0098977_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0098977_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0098977_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0098977_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0098977_40	UniRef90	UniRef90_A0A1C6DZ71	Phage major capsid protein, HK97 family	NA
UHGV-0098977_40	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0098977_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0098977_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0098977_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0098977_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0098977_41	PHROG	phrog_749	NA	unknown function
UHGV-0098977_41	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-0098977_41	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0098977_42	PHROG	phrog_19734	NA	unknown function
UHGV-0098977_42	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0098977_42	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0098977_42	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0098977_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0098977_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0098977_43	UniRef90	UniRef90_A0A1C6DYP9	Phage protein, HK97 gp10 family	NA
UHGV-0098977_43	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0098977_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0098977_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0098977_43	Structural annotation	TIGR01725	NA	NA
UHGV-0098977_44	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0098977_44	COG	COG5492	NA	NA
UHGV-0098977_44	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0098977_45	PHROG	phrog_88	major tail protein	tail
UHGV-0098977_45	UniRef90	UniRef90_A0A1C6DYZ6	Phage major tail protein, phi13 family	NA
UHGV-0098977_45	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0098977_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0098977_45	COG	COG5492	NA	NA
UHGV-0098977_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0098977_46	PHROG	phrog_2115	tail protein	tail
UHGV-0098977_46	Structural annotation	PF11836	NA	NA
UHGV-0098977_48	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0098977_48	PHROG	phrog_5218	NA	unknown function
UHGV-0098977_48	UniRef90	UniRef90_A0A1C6DY47	Phage-related minor tail protein	NA
UHGV-0098977_48	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0098977_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0098977_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0098977_49	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0098977_50	PHROG	phrog_18110	NA	unknown function
UHGV-0098977_50	UniRef90	UniRef90_A0A1C6DYP3	Phage minor structural protein, N-terminal region	NA
UHGV-0098977_50	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0098977_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0098977_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0098977_50	COG	COG4926	Phage-related protein	NA
UHGV-0098977_51	PHROG	phrog_16164	NA	unknown function
UHGV-0098977_51	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0098977_51	Structural annotation	PF00015, NF032891	NA	NA
UHGV-0098977_53	PHROG	phrog_28526	NA	unknown function
UHGV-0098977_53	UniRef90	UniRef90_A0A3D4R9W1	Antitoxin	NA
UHGV-0098977_53	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0098977_54	PHROG	phrog_199	holin	lysis
UHGV-0098977_54	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0098977_54	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0098977_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0098977_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0098977_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0098977_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0098977_55	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0098977_55	PHROG	phrog_1794	amidase	lysis
UHGV-0098977_55	UniRef90	UniRef90_UPI001570B791	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098977_55	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0098977_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0098977_55	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098977_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0098977_56	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0098977_56	UniRef90	UniRef90_A0A1C6DWW6	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-0098977_56	eggNOG-mapper	658088.HMPREF0987_00181	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0098977_56	Pfam	PF00919	NA	UPF0004
UHGV-0098977_56	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0098977_56	Pfam	PF01938	TRAM domain	TRAM
UHGV-0098977_56	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-0098977_56	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0098977_56	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-0098977_56	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA
UHGV-0098977_57	UniRef90	UniRef90_A0A3B9K928	16S rRNA (Cytosine(1402)-N(4))-methyltransferase (Fragment)	NA
UHGV-0098977_57	eggNOG-mapper	411459.RUMOBE_03913	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA	NA
UHGV-0098977_57	COG	COG0275	16S rRNA C1402 N4-methylase RsmH	NA