UHGV-0098982

Genome information

Genome length 20,348 bps

CDS count 27

Completeness 56.01% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0098982
vOTU ID	vOTU-018968
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221904
BioSample	SAMEA3541562
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.45
Jumbo phage	No

Genome content
Genome length	20,348 bps
GC content	30.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	93.78%
Average CDS length	710.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0098982_1	PHROG	phrog_435	endolysin	lysis
UHGV-0098982_1	UniRef90	UniRef90_UPI0011CFFE83	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098982_1	eggNOG-mapper	1414720.CBYM010000002_gene552	Ami_3	NA
UHGV-0098982_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0098982_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0098982_1	Structural annotation	PF01520, TIGR02883, COG0698	NA	NA
UHGV-0098982_2	PHROG	phrog_199	holin	lysis
UHGV-0098982_2	UniRef90	UniRef90_UPI00140FD175	phage holin family protein	NA
UHGV-0098982_2	eggNOG-mapper	1232449.BAHV02000008_gene653	Bacteriophage holin family	NA
UHGV-0098982_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0098982_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0098982_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0098982_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0098982_3	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0098982_3	PHROG	phrog_11541	NA	unknown function
UHGV-0098982_3	UniRef90	UniRef90_UPI0018AB4B38	SGNH/GDSL hydrolase family protein	NA
UHGV-0098982_3	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0098982_3	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0098982_3	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0098982_4	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0098982_5	PHROG	phrog_3558	tail protein	tail
UHGV-0098982_5	UniRef90	UniRef90_UPI0004B53C32	phage tail protein	NA
UHGV-0098982_5	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0098982_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0098982_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0098982_5	COG	COG4926	Phage-related protein	NA
UHGV-0098982_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0098982_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0098982_6	UniRef90	UniRef90_UPI0004ACC375	phage tail family protein	NA
UHGV-0098982_6	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0098982_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0098982_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0098982_6	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0098982_7	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0098982_7	UniRef90	UniRef90_UPI0004AC99C3	phage tail tape measure protein	NA
UHGV-0098982_7	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-0098982_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0098982_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0098982_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0098982_8	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-0098982_9	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-0098982_10	PHROG	phrog_885	major tail protein	tail
UHGV-0098982_10	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0098982_10	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0098982_11	PHROG	phrog_957	head protein	head and packaging
UHGV-0098982_11	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0098982_11	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0098982_11	Pfam	PF11367	NA	DUF3168
UHGV-0098982_11	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0098982_12	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0098982_12	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0098982_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0098982_12	Structural annotation	TIGR01725	NA	NA
UHGV-0098982_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0098982_13	UniRef90	UniRef90_UPI0004ACD6EB	phage head closure protein	NA
UHGV-0098982_13	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0098982_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0098982_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0098982_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0098982_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0098982_14	PHROG	phrog_5223	neck protein	connector
UHGV-0098982_14	UniRef90	UniRef90_UPI0004B59526	head-tail connector protein	NA
UHGV-0098982_14	eggNOG-mapper	1414720.CBYM010000040_gene1648	NA	NA
UHGV-0098982_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0098982_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0098982_15	UniRef90	UniRef90_UPI001C05FA86	phage major capsid protein	NA
UHGV-0098982_15	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-0098982_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0098982_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0098982_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0098982_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0098982_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0098982_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0098982_16	UniRef90	UniRef90_UPI001896FC99	Clp protease ClpP	NA
UHGV-0098982_16	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0098982_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0098982_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0098982_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0098982_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0098982_17	UniRef90	UniRef90_UPI0005AACF6F	phage portal protein	NA
UHGV-0098982_17	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0098982_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0098982_17	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0098982_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0098982_18	UniRef90	UniRef90_UPI0004B93F61	terminase large subunit	NA
UHGV-0098982_18	eggNOG-mapper	1414720.CBYM010000040_gene1644	Terminase	NA
UHGV-0098982_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0098982_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0098982_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0098982_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0098982_19	PHROG	phrog_1066	NA	unknown function
UHGV-0098982_19	eggNOG-mapper	1414720.CBYM010000040_gene1643	NA	NA
UHGV-0098982_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0098982_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0098982_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0098982_20	UniRef90	UniRef90_UPI0004BB51A8	HNH endonuclease	NA
UHGV-0098982_20	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0098982_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0098982_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0098982_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0098982_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0098982_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0098982_22	UniRef90	UniRef90_UPI0004B95617	tyrosine-type recombinase/integrase	NA
UHGV-0098982_22	eggNOG-mapper	1414720.CBYM010000040_gene1640	Integrase	NA
UHGV-0098982_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0098982_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0098982_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0098982_23	PHROG	phrog_3928	NA	unknown function
UHGV-0098982_23	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0098982_24	UniRef90	UniRef90_UPI0018A8EB18	NA	NA
UHGV-0098982_24	eggNOG-mapper	1414720.CBYM010000040_gene1638	NA	NA
UHGV-0098982_24	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0098982_26	eggNOG-mapper	1414720.CBYM010000040_gene1636	NA	NA
UHGV-0098982_27	eggNOG-mapper	1391647.AVSV01000022_gene2528	NA	NA