UHGV-0099124

Genome information

Genome length 60,815 bps

CDS count 93

Completeness 79.42% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099124
vOTU ID	vOTU-041828
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226194
BioSample	SAMEA3708692
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.13
Jumbo phage	No

Genome content
Genome length	60,815 bps
GC content	39.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	87.31%
Average CDS length	573.65 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099124_1	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0099124_2	UniRef90	UniRef90_A0A1C5TXM0	HTH cro/C1-type domain-containing protein	NA
UHGV-0099124_2	Pfam	PF20075	NA	DUF6471
UHGV-0099124_2	Structural annotation	PF20075, NF041951, COG3655	NA	NA
UHGV-0099124_3	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0099124_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0099124_3	UniRef90	UniRef90_A0A1C5TXI4	Putative transposon Tn552 DNA-invertase bin3	NA
UHGV-0099124_3	eggNOG-mapper	476272.RUMHYD_01910	Resolvase, N terminal domain	NA
UHGV-0099124_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0099124_3	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0099124_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0099124_3	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0099124_4	eggNOG-mapper	476272.RUMHYD_01911	NA	NA
UHGV-0099124_4	Structural annotation	PF08962	NA	NA
UHGV-0099124_5	UniRef90	UniRef90_A0A6N2TPV5	RHH_1 domain-containing protein	NA
UHGV-0099124_5	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0099124_6	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0099124_9	PHROG	phrog_1048	NA	unknown function
UHGV-0099124_9	UniRef90	UniRef90_A0A417PRP3	NA	NA
UHGV-0099124_9	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0099124_9	Pfam	PF11195	NA	DUF2829
UHGV-0099124_9	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0099124_9	Structural annotation	PF11195	NA	NA
UHGV-0099124_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0099124_12	UniRef90	UniRef90_A0A317UAG4	Bro-N domain-containing protein	NA
UHGV-0099124_12	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0099124_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0099124_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0099124_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0099124_12	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0099124_18	KOfam	K03744	lemA; LemA protein	NA
UHGV-0099124_18	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0099124_18	UniRef90	UniRef90_A0A414SKJ0	LemA family protein	NA
UHGV-0099124_18	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0099124_18	Pfam	PF04011	LemA family	LemA
UHGV-0099124_18	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0099124_18	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0099124_19	PHROG	phrog_3886	NA	unknown function
UHGV-0099124_19	eggNOG-mapper	742733.HMPREF9469_05056	NA	NA
UHGV-0099124_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0099124_20	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-0099124_20	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0099124_20	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0099124_20	COG	COG5410	NA	NA
UHGV-0099124_20	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0099124_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099124_21	UniRef90	UniRef90_A0A412EN86	NA	NA
UHGV-0099124_21	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0099124_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0099124_21	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0099124_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0099124_22	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-0099124_22	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099124_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099124_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0099124_23	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0099124_23	UniRef90	UniRef90_D7GWD5	Phage Mu protein F like protein	NA
UHGV-0099124_23	eggNOG-mapper	1329516.JPST01000018_gene2643	cell adhesion	NA
UHGV-0099124_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0099124_23	COG	COG2369	NA	NA
UHGV-0099124_23	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0099124_24	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0099124_24	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0099124_24	Structural annotation	PF14265	NA	NA
UHGV-0099124_25	PHROG	phrog_909	major head protein	head and packaging
UHGV-0099124_25	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0099124_25	Structural annotation	PF02924	NA	NA
UHGV-0099124_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0099124_26	UniRef90	UniRef90_UPI001D084066	major capsid protein	NA
UHGV-0099124_26	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0099124_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0099124_26	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0099124_27	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0099124_28	PHROG	phrog_937	hemolysin	other
UHGV-0099124_29	UniRef90	UniRef90_A0A412EMQ9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0099124_29	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0099124_29	Structural annotation	PF04545, MF_00674, NF001073, COG1595	NA	NA
UHGV-0099124_30	PHROG	phrog_21718	NA	unknown function
UHGV-0099124_30	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0099124_32	PHROG	phrog_16490	NA	unknown function
UHGV-0099124_32	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0099124_33	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0099124_37	eggNOG-mapper	743722.Sph21_3460	NA	NA
UHGV-0099124_38	PHROG	phrog_2329	NA	unknown function
UHGV-0099124_38	UniRef90	UniRef90_A0A3R6DLU7	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0099124_38	Structural annotation	PF04014, COG2336	NA	NA
UHGV-0099124_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0099124_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0099124_39	UniRef90	UniRef90_A0A373N0F6	Integrase	NA
UHGV-0099124_39	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0099124_39	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0099124_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099124_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0099124_39	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0099124_40	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0099124_41	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0099124_41	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0099124_41	AcrCatalog	cluster_24841	NA	NA
UHGV-0099124_42	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0099124_42	UniRef90	UniRef90_A0A317UDN3	Rha family transcriptional regulator	NA
UHGV-0099124_42	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0099124_42	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0099124_42	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0099124_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0099124_42	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0099124_43	Structural annotation	PF05657	NA	NA
UHGV-0099124_44	PHROG	phrog_443	holin	lysis
UHGV-0099124_44	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-0099124_44	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0099124_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0099124_44	Structural annotation	PF16945	NA	NA
UHGV-0099124_45	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0099124_45	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0099124_46	PHROG	phrog_36112	NA	unknown function
UHGV-0099124_46	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-0099124_46	Structural annotation	PF16478	NA	NA
UHGV-0099124_48	PHROG	phrog_28918	NA	unknown function
UHGV-0099124_48	UniRef90	UniRef90_A0A0F0C7Q9	Chromosome partition protein Smc	NA
UHGV-0099124_48	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0099124_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0099124_49	PHROG	phrog_1194	NA	unknown function
UHGV-0099124_49	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0099124_49	Pfam	PF20458	NA	DUF6711
UHGV-0099124_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0099124_50	PHROG	phrog_18190	NA	unknown function
UHGV-0099124_50	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0099124_50	eggNOG-mapper	428125.CLOLEP_02759	pathogenesis	NA
UHGV-0099124_50	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0099124_50	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0099124_50	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA
UHGV-0099124_50	Structural annotation	PF13306, PF07523, PF05113, NF033848, NF040978, COG3500	NA	NA
UHGV-0099124_51	Structural annotation	PF09826, MF_04071, NF008351, COG5276	NA	NA
UHGV-0099124_52	PHROG	phrog_9589	endolysin	lysis
UHGV-0099124_52	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0099124_52	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0099124_52	Pfam	PF05257	CHAP domain	CHAP
UHGV-0099124_52	COG	COG3942	Surface antigen	NA
UHGV-0099124_52	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0099124_53	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0099124_53	PHROG	phrog_8810	NA	unknown function
UHGV-0099124_53	UniRef90	UniRef90_A0A395X907	Stage 0 sporulation protein A homolog	NA
UHGV-0099124_53	eggNOG-mapper	1121115.AXVN01000039_gene3291	LytTr DNA-binding domain	NA
UHGV-0099124_53	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0099124_53	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0099124_53	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0099124_53	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0099124_58	Structural annotation	PF02701, NF041869	NA	NA
UHGV-0099124_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099124_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099124_59	UniRef90	UniRef90_A0A412EKU3	XRE family transcriptional regulator	NA
UHGV-0099124_59	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-0099124_59	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0099124_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099124_59	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0099124_62	Pfam	PF07295	Zinc-ribbon containing domain	DUF1451
UHGV-0099124_63	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0099124_63	UniRef90	UniRef90_A0A7U9JWI4	ORF6N domain-containing protein,ORF6C domain-containing protein	NA
UHGV-0099124_63	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0099124_63	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0099124_63	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0099124_63	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0099124_63	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0099124_64	Structural annotation	MF_01360	NA	NA
UHGV-0099124_70	UniRef90	UniRef90_A0A101WFW2	Single-stranded DNA-binding protein	NA
UHGV-0099124_70	eggNOG-mapper	697281.Mahau_1483	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0099124_70	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099124_70	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099124_71	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0099124_71	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099124_71	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-0099124_71	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0099124_71	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0099124_71	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0099124_72	PHROG	phrog_20040	NA	unknown function
UHGV-0099124_72	eggNOG-mapper	1347393.HG726022_gene3609	NA	NA
UHGV-0099124_73	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099124_73	UniRef90	UniRef90_A0A3E5EP23	PHB domain-containing protein	NA
UHGV-0099124_73	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0099124_73	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0099124_76	PHROG	phrog_25456	NA	unknown function
UHGV-0099124_77	PHROG	phrog_19610	NA	unknown function
UHGV-0099124_78	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0099124_78	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0099124_78	UniRef90	UniRef90_A0A373NR15	MBL fold metallo-hydrolase	NA
UHGV-0099124_78	eggNOG-mapper	476272.RUMHYD_03342	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0099124_78	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0099124_78	dbAPIS	APIS062	NA	NA
UHGV-0099124_78	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0099124_78	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0099124_80	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0099124_80	UniRef90	UniRef90_A0A0U5C801	RHH_5 domain-containing protein	NA
UHGV-0099124_80	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-0099124_80	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0099124_80	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0099124_81	PHROG	phrog_19106	NA	unknown function
UHGV-0099124_81	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0099124_81	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0099124_81	Structural annotation	TIGR01453	NA	NA
UHGV-0099124_82	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0099124_82	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0099124_82	UniRef90	UniRef90_F7JKD7	Methyltransferase	NA
UHGV-0099124_82	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0099124_82	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0099124_82	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0099124_82	COG	COG0863	DNA modification methylase	NA
UHGV-0099124_82	Structural annotation	PF01555, MF_00786, NF010253, COG0863	NA	NA
UHGV-0099124_83	UniRef90	UniRef90_A0A317UAL9	LexA_DNA_bind domain-containing protein	NA
UHGV-0099124_83	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0099124_84	Structural annotation	PF04936	NA	NA
UHGV-0099124_86	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099124_86	UniRef90	UniRef90_A0A258UW07	HNHc domain-containing protein	NA
UHGV-0099124_86	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0099124_86	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0099124_86	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0099124_87	eggNOG-mapper	33035.JPJF01000127_gene269	C-5 cytosine-specific DNA methylase	NA
UHGV-0099124_87	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0099124_89	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0099124_89	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0099124_89	UniRef90	UniRef90_UPI000CF96674	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0099124_89	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0099124_89	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0099124_89	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0099124_89	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0099124_89	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0099124_91	Structural annotation	PF17888	NA	NA