UHGV-0099132

Genome information

Genome length 30,097 bps

CDS count 58

Completeness 56.75% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099132
vOTU ID	vOTU-036943
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_212106
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.21
Jumbo phage	No

Genome content
Genome length	30,097 bps
GC content	47.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	83.71%
Average CDS length	438.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099132_2	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0099132_5	PHROG	phrog_585	NA	unknown function
UHGV-0099132_5	UniRef90	UniRef90_A0A2G0E8R9	NA	NA
UHGV-0099132_5	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0099132_5	Pfam	PF10711	NA	DUF2513
UHGV-0099132_5	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0099132_6	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0099132_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099132_7	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0099132_7	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0099132_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099132_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099132_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0099132_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0099132_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0099132_8	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0099132_8	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0099132_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0099132_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0099132_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0099132_8	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0099132_10	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0099132_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0099132_10	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0099132_12	PHROG	phrog_5070	NA	unknown function
UHGV-0099132_12	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0099132_12	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0099132_12	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0099132_13	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099132_13	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0099132_13	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0099132_13	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099132_13	Structural annotation	PF17375	NA	NA
UHGV-0099132_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099132_19	UniRef90	UniRef90_A0A7X7UVS4	ERF family protein	NA
UHGV-0099132_19	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0099132_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0099132_19	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0099132_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0099132_20	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0099132_20	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0099132_20	Structural annotation	PF05772	NA	NA
UHGV-0099132_21	PHROG	phrog_7566	NA	unknown function
UHGV-0099132_21	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0099132_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099132_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099132_22	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-0099132_22	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0099132_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099132_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099132_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099132_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099132_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0099132_23	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0099132_23	UniRef90	UniRef90_UPI001F1B43AF	GntR family transcriptional regulator	NA
UHGV-0099132_23	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0099132_23	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0099132_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0099132_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0099132_24	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0099132_24	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0099132_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0099132_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0099132_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0099132_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0099132_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0099132_26	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099132_26	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0099132_26	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0099132_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0099132_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0099132_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0099132_27	UniRef90	UniRef90_A0A316NCX3	Immunoglobulin	NA
UHGV-0099132_27	eggNOG-mapper	1235797.C816_04036	NA	NA
UHGV-0099132_28	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0099132_28	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0099132_28	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0099132_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0099132_28	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0099132_32	KOfam	K06940	NA	NA
UHGV-0099132_32	PHROG	phrog_32498	NA	unknown function
UHGV-0099132_32	UniRef90	UniRef90_A0A1W7ABU4	Flagellin N-methylase	NA
UHGV-0099132_32	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0099132_32	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0099132_32	Structural annotation	PF03692	NA	NA
UHGV-0099132_34	PHROG	phrog_9958	NA	unknown function
UHGV-0099132_34	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0099132_34	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0099132_34	Structural annotation	PF19789	NA	NA
UHGV-0099132_43	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0099132_43	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0099132_43	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0099132_43	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0099132_43	Pfam	PF00692	dUTPase	dUTPase
UHGV-0099132_43	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0099132_43	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099132_43	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0099132_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0099132_44	PHROG	phrog_12862	NA	unknown function
UHGV-0099132_44	UniRef90	UniRef90_UPI001E530B79	site-specific DNA-methyltransferase	NA
UHGV-0099132_44	eggNOG-mapper	697284.ERIC2_c10650	DNA methylase	NA
UHGV-0099132_44	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0099132_44	COG	COG0863	DNA modification methylase	NA
UHGV-0099132_45	KOfam	K07496	K07496; putative transposase	NA
UHGV-0099132_45	PHROG	phrog_506	transposase	integration and excision
UHGV-0099132_45	UniRef90	UniRef90_A0A7X2NPP9	IS200/IS605 family element transposase accessory protein TnpB	NA
UHGV-0099132_45	eggNOG-mapper	658088.HMPREF0987_00322	Putative transposase DNA-binding domain	NA
UHGV-0099132_45	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0099132_45	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0099132_45	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0099132_45	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0099132_45	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0099132_45	COG	COG0675	Transposase	NA
UHGV-0099132_45	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0099132_46	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0099132_46	PHROG	phrog_2577	transposase	integration and excision
UHGV-0099132_46	UniRef90	UniRef90_E9RZR8	Y1_Tnp domain-containing protein	NA
UHGV-0099132_46	eggNOG-mapper	471875.RUMLAC_02064	PFAM transposase IS200-family protein	NA
UHGV-0099132_46	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0099132_46	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0099132_46	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0099132_46	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0099132_47	Structural annotation	PF16677	NA	NA
UHGV-0099132_48	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0099132_50	eggNOG-mapper	397291.C804_01048	NA	NA
UHGV-0099132_52	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0099132_52	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0099132_52	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0099132_52	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0099132_52	COG	COG5410	NA	NA
UHGV-0099132_52	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0099132_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0099132_54	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0099132_54	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099132_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099132_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0099132_55	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0099132_55	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0099132_55	eggNOG-mapper	1121451.DESAM_10288	head morphogenesis protein, SPP1 gp7	NA
UHGV-0099132_55	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0099132_55	COG	COG2369	NA	NA
UHGV-0099132_55	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0099132_58	PHROG	phrog_29	major head protein	head and packaging
UHGV-0099132_58	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0099132_58	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0099132_58	Structural annotation	PF03864, MF_04133	NA	NA