UHGV-0099291

Genome information

Genome length 22,982 bps

CDS count 37

Completeness 53.82% (medium-quality)

geNomad score 0.9075

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099291
vOTU ID	vOTU-040292
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210489
BioSample	SAMEA3449325
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9075
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.81
Jumbo phage	No

Genome content
Genome length	22,982 bps
GC content	65.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	86.58%
Average CDS length	542.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099291_1	KOfam	K14059	int; integrase	NA
UHGV-0099291_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0099291_1	UniRef90	UniRef90_A0A7C4F774	Site-specific integrase	NA
UHGV-0099291_1	eggNOG-mapper	760568.Desku_1398	Belongs to the 'phage' integrase family	NA
UHGV-0099291_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099291_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099291_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0099291_2	PHROG	phrog_16228	NA	unknown function
UHGV-0099291_2	UniRef90	UniRef90_F5L4E2	Uma2 domain-containing protein	NA
UHGV-0099291_2	eggNOG-mapper	986075.CathTA2_0654	protein conserved in cyanobacteria	NA
UHGV-0099291_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0099291_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0099291_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0099291_3	PHROG	phrog_5059	NA	unknown function
UHGV-0099291_3	UniRef90	UniRef90_A0A6N7ITZ2	NA	NA
UHGV-0099291_3	eggNOG-mapper	632292.Calhy_0845	NA	NA
UHGV-0099291_3	Pfam	PF08861	NA	DUF1828
UHGV-0099291_3	Pfam	PF08862	NA	DUF1829
UHGV-0099291_3	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0099291_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0099291_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0099291_5	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-0099291_5	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0099291_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099291_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0099291_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0099291_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0099291_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099291_6	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0099291_6	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0099291_6	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-0099291_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099291_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099291_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0099291_7	UniRef90	UniRef90_A0A354I2Z5	Arc domain-containing protein	NA
UHGV-0099291_7	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0099291_7	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0099291_8	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0099291_9	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0099291_9	UniRef90	UniRef90_UPI0012B58364	Arc family DNA-binding protein	NA
UHGV-0099291_9	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0099291_9	Structural annotation	PF03869, NF041793, COG4877	NA	NA
UHGV-0099291_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0099291_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099291_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0099291_16	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099291_16	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-0099291_16	eggNOG-mapper	1444309.JAQG01000013_gene1928	nuclear chromosome segregation	NA
UHGV-0099291_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0099291_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0099291_16	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0099291_17	PHROG	phrog_862	NA	unknown function
UHGV-0099291_17	eggNOG-mapper	926549.KI421517_gene2362	NA	NA
UHGV-0099291_17	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0099291_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0099291_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0099291_18	UniRef90	UniRef90_A0A3A4U092	MBL fold metallo-hydrolase	NA
UHGV-0099291_18	eggNOG-mapper	1118054.CAGW01000106_gene3694	Metallo-beta-lactamase superfamily	NA
UHGV-0099291_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0099291_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0099291_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0099291_19	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0099291_19	eggNOG-mapper	411483.FAEPRAA2165_01877	HNH endonuclease	NA
UHGV-0099291_19	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0099291_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0099291_19	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0099291_24	PHROG	phrog_31049	NA	unknown function
UHGV-0099291_24	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0099291_24	Structural annotation	TIGR01636	NA	NA
UHGV-0099291_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0099291_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0099291_25	UniRef90	UniRef90_UPI001958B4B1	site-specific DNA-methyltransferase	NA
UHGV-0099291_25	eggNOG-mapper	411467.BACCAP_01785	DNA methylase	NA
UHGV-0099291_25	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0099291_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0099291_25	COG	COG0863	DNA modification methylase	NA
UHGV-0099291_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0099291_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0099291_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0099291_26	UniRef90	UniRef90_A0A0D8BT54	Terminase small subunit	NA
UHGV-0099291_26	eggNOG-mapper	1226322.HMPREF1545_04056	Terminase Small Subunit	NA
UHGV-0099291_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0099291_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0099291_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0099291_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099291_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0099291_27	UniRef90	UniRef90_UPI001956A371	PBSX family phage terminase large subunit	NA
UHGV-0099291_27	eggNOG-mapper	1121344.JHZO01000003_gene977	Phage terminase, large subunit, PBSX family	NA
UHGV-0099291_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0099291_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0099291_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099291_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099291_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0099291_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0099291_28	UniRef90	UniRef90_A0A3C0SQE8	Phage portal protein (Fragment)	NA
UHGV-0099291_28	eggNOG-mapper	1121344.JHZO01000003_gene976	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099291_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099291_29	PHROG	phrog_9064	portal protein	head and packaging
UHGV-0099291_29	UniRef90	UniRef90_UPI001CDC03E8	phage portal protein	NA
UHGV-0099291_29	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0099291_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099291_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0099291_30	UniRef90	UniRef90_A0A0D1YAY0	Phage_Mu_F domain-containing protein	NA
UHGV-0099291_30	eggNOG-mapper	649747.HMPREF0083_05316	Phage Mu protein F like protein	NA
UHGV-0099291_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0099291_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0099291_30	COG	COG2369	NA	NA
UHGV-0099291_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0099291_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0099291_33	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-0099291_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0099291_34	PHROG	phrog_267	major head protein	head and packaging
UHGV-0099291_34	UniRef90	UniRef90_A0A6N2YA79	P22 coat protein - gene protein 5	NA
UHGV-0099291_34	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0099291_34	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0099291_34	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099291_35	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0099291_35	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0099291_35	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0099291_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0099291_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0099291_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0099291_37	UniRef90	UniRef90_UPI001E401074	HK97 gp10 family phage protein	NA
UHGV-0099291_37	eggNOG-mapper	268407.PWYN_03010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0099291_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like