UHGV-0099305

Genome information

Genome length 37,675 bps

CDS count 61

Completeness 99.99% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099305
vOTU ID	vOTU-066346
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216268
BioSample	SAMEA3541496
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.51
Jumbo phage	No

Genome content
Genome length	37,675 bps
GC content	43.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.85%
Average CDS length	572.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099305_1	PHROG	phrog_13141	NA	unknown function
UHGV-0099305_1	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0099305_1	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0099305_1	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0099305_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0099305_2	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0099305_2	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0099305_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0099305_2	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0099305_3	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0099305_3	eggNOG-mapper	411460.RUMTOR_02095	NA	NA
UHGV-0099305_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0099305_4	PHROG	phrog_5218	NA	unknown function
UHGV-0099305_4	UniRef90	UniRef90_A5KPB0	Phage tail tape measure protein, TP901 family	NA
UHGV-0099305_4	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0099305_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0099305_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0099305_4	COG	COG4487	NA	NA
UHGV-0099305_4	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0099305_5	PHROG	phrog_706	NA	unknown function
UHGV-0099305_5	UniRef90	UniRef90_A0A174B750	Bacteriophage Gp15 protein	NA
UHGV-0099305_5	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0099305_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099305_5	Structural annotation	PF06854	NA	NA
UHGV-0099305_6	PHROG	phrog_4450	NA	unknown function
UHGV-0099305_6	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0099305_6	Pfam	PF20378	NA	DUF6673
UHGV-0099305_6	Structural annotation	PF20378	NA	NA
UHGV-0099305_7	PHROG	phrog_3099	NA	unknown function
UHGV-0099305_7	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0099305_7	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0099305_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0099305_8	PHROG	phrog_3266	tail completion	connector
UHGV-0099305_8	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-0099305_8	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0099305_8	Structural annotation	PF12691	NA	NA
UHGV-0099305_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099305_9	UniRef90	UniRef90_A0A174B7G8	Minor capsid protein	NA
UHGV-0099305_9	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0099305_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0099305_9	Structural annotation	PF11114	NA	NA
UHGV-0099305_10	PHROG	phrog_3366	NA	unknown function
UHGV-0099305_10	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0099305_10	Pfam	PF20536	NA	DUF6751
UHGV-0099305_10	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0099305_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099305_11	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0099305_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0099305_12	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0099305_12	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0099305_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0099305_13	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0099305_13	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0099305_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0099305_13	Structural annotation	PF06810	NA	NA
UHGV-0099305_14	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0099305_14	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-0099305_14	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0099305_14	Pfam	PF14359	NA	DUF4406
UHGV-0099305_14	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0099305_15	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0099305_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099305_16	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0099305_16	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0099305_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099305_16	COG	COG2369	NA	NA
UHGV-0099305_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0099305_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099305_17	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-0099305_17	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0099305_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099305_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099305_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0099305_18	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0099305_18	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0099305_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0099305_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099305_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099305_18	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0099305_19	PHROG	phrog_2412	NA	unknown function
UHGV-0099305_19	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0099305_19	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0099305_20	eggNOG-mapper	411460.RUMTOR_02083	NA	NA
UHGV-0099305_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0099305_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0099305_21	UniRef90	UniRef90_A5KP98	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0099305_21	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0099305_21	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0099305_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0099305_21	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0099305_22	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0099305_22	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0099305_22	UniRef90	UniRef90_A0A396PU56	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0099305_22	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0099305_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0099305_22	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0099305_22	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0099305_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099305_23	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0099305_23	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0099305_23	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0099305_25	PHROG	phrog_30671	NA	unknown function
UHGV-0099305_25	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0099305_26	PHROG	phrog_25555	NA	unknown function
UHGV-0099305_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0099305_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0099305_27	UniRef90	UniRef90_A0A828SYW6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0099305_27	eggNOG-mapper	411460.RUMTOR_02076	C-5 cytosine-specific DNA methylase	NA
UHGV-0099305_27	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0099305_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0099305_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0099305_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0099305_28	PHROG	phrog_25488	NA	unknown function
UHGV-0099305_28	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0099305_30	PHROG	phrog_3253	NA	unknown function
UHGV-0099305_30	eggNOG-mapper	411460.RUMTOR_02072	NA	NA
UHGV-0099305_31	PHROG	phrog_23374	NA	unknown function
UHGV-0099305_31	eggNOG-mapper	1256908.HMPREF0373_00664	NA	NA
UHGV-0099305_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0099305_33	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0099305_33	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0099305_33	Pfam	PF06048	NA	DUF927
UHGV-0099305_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0099305_33	COG	COG5519	NA	NA
UHGV-0099305_33	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0099305_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0099305_34	PHROG	phrog_11992	NA	unknown function
UHGV-0099305_34	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0099305_34	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0099305_34	PADLOC	drt-UG29	DRT	DRT
UHGV-0099305_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0099305_34	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0099305_34	Structural annotation	PF01807	NA	NA
UHGV-0099305_35	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0099305_35	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0099305_35	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0099305_35	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0099305_35	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0099305_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099305_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099305_36	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0099305_36	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0099305_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099305_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099305_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099305_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099305_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0099305_37	PHROG	phrog_21649	NA	unknown function
UHGV-0099305_37	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0099305_37	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0099305_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-0099305_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099305_37	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0099305_38	PHROG	phrog_674	NA	unknown function
UHGV-0099305_38	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0099305_38	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0099305_38	Pfam	PF07083	NA	DUF1351
UHGV-0099305_38	Structural annotation	PF07083	NA	NA
UHGV-0099305_39	PHROG	phrog_3777	NA	unknown function
UHGV-0099305_39	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0099305_39	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0099305_39	Pfam	PF12957	NA	DUF3846
UHGV-0099305_39	Structural annotation	PF12957	NA	NA
UHGV-0099305_41	PHROG	phrog_5070	NA	unknown function
UHGV-0099305_41	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0099305_41	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0099305_41	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0099305_41	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0099305_41	Structural annotation	NF040481	NA	NA
UHGV-0099305_43	PHROG	phrog_22934	NA	unknown function
UHGV-0099305_45	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0099305_49	UniRef90	UniRef90_UPI001D08CC15	helix-turn-helix transcriptional regulator	NA
UHGV-0099305_49	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0099305_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0099305_49	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0099305_50	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0099305_51	PHROG	phrog_585	NA	unknown function
UHGV-0099305_51	UniRef90	UniRef90_A0A7G9G8R3	NA	NA
UHGV-0099305_51	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0099305_51	Pfam	PF10711	NA	DUF2513
UHGV-0099305_54	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099305_54	UniRef90	UniRef90_UPI001C3A6F66	NA	NA
UHGV-0099305_54	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0099305_54	Structural annotation	PF06573	NA	NA
UHGV-0099305_55	PHROG	phrog_3882	NA	unknown function
UHGV-0099305_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099305_56	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0099305_56	eggNOG-mapper	903814.ELI_3146	DNA-binding helix-turn-helix protein	NA
UHGV-0099305_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099305_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099305_56	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0099305_58	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0099305_58	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0099305_58	UniRef90	UniRef90_A0A3E2WVB0	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0099305_58	eggNOG-mapper	1232453.BAIF02000057_gene1120	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0099305_58	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0099305_58	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0099305_58	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0099305_60	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0099305_60	PHROG	phrog_8036	NA	unknown function
UHGV-0099305_60	UniRef90	UniRef90_A0A174C9Y4	DNA damage-inducible protein D	NA
UHGV-0099305_60	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0099305_60	AcrCatalog	cluster_17589	NA	NA
UHGV-0099305_60	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0099305_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0099305_60	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0099305_60	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0099305_60	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0099305_61	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0099305_61	PHROG	phrog_95	integrase	integration and excision
UHGV-0099305_61	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0099305_61	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0099305_61	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0099305_61	Pfam	PF07508	Recombinase	Recombinase
UHGV-0099305_61	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0099305_61	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0099305_61	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA