UHGV-0099376

Genome information

Genome length 29,101 bps

CDS count 48

Completeness 80.62% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099376
vOTU ID	vOTU-024159
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_213814
BioSample	SAMEA3541593
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.21
Jumbo phage	No

Genome content
Genome length	29,101 bps
GC content	44.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.50%
Average CDS length	569.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099376_1	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0099376_1	Structural annotation	PF10651	NA	NA
UHGV-0099376_2	Structural annotation	PF21295, NF012201	NA	NA
UHGV-0099376_3	PHROG	phrog_3558	tail protein	tail
UHGV-0099376_3	UniRef90	UniRef90_A0A373Y1Z4	Prophage_tail domain-containing protein	NA
UHGV-0099376_3	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-0099376_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0099376_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0099376_3	COG	COG4926	Phage-related protein	NA
UHGV-0099376_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0099376_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0099376_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0099376_4	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0099376_5	PHROG	phrog_23464	NA	unknown function
UHGV-0099376_5	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0099376_5	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0099376_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0099376_5	Structural annotation	COG5280	NA	NA
UHGV-0099376_6	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0099376_7	Structural annotation	PF17388	NA	NA
UHGV-0099376_8	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0099376_8	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0099376_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0099376_9	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0099376_9	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0099376_9	UniRef90	UniRef90_A0A373VQE6	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0099376_9	eggNOG-mapper	1416012.V5URG0_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0099376_9	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0099376_9	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0099376_10	Structural annotation	PF20765	NA	NA
UHGV-0099376_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0099376_11	UniRef90	UniRef90_A0A373Y1Z1	HK97 gp10 family phage protein	NA
UHGV-0099376_11	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0099376_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0099376_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0099376_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0099376_12	UniRef90	UniRef90_A0A373XZI9	Phage head-tail adapter protein	NA
UHGV-0099376_12	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0099376_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0099376_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0099376_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0099376_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0099376_13	PHROG	phrog_5223	neck protein	connector
UHGV-0099376_13	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0099376_13	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0099376_13	Structural annotation	TIGR01560	NA	NA
UHGV-0099376_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0099376_14	UniRef90	UniRef90_A0A373Y235	Phage major capsid protein	NA
UHGV-0099376_14	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0099376_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0099376_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0099376_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0099376_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0099376_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0099376_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0099376_15	UniRef90	UniRef90_A0A1C5SFD0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0099376_15	eggNOG-mapper	626523.GCWU000342_01026	Belongs to the peptidase S14 family	NA
UHGV-0099376_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0099376_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0099376_15	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0099376_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0099376_16	UniRef90	UniRef90_A0A373XZJ2	Phage portal protein	NA
UHGV-0099376_16	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0099376_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0099376_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0099376_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0099376_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0099376_17	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-0099376_17	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0099376_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0099376_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0099376_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0099376_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0099376_18	PHROG	phrog_1066	NA	unknown function
UHGV-0099376_18	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0099376_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0099376_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099376_19	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0099376_19	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0099376_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0099376_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099376_20	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-0099376_20	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-0099376_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0099376_20	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0099376_22	Structural annotation	PF09629, NF000331	NA	NA
UHGV-0099376_24	eggNOG-mapper	1235793.C809_02207	NA	NA
UHGV-0099376_29	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0099376_29	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0099376_29	UniRef90	UniRef90_R6SWZ2	SF4 helicase domain-containing protein	NA
UHGV-0099376_29	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0099376_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-0099376_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0099376_29	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0099376_30	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0099376_30	UniRef90	UniRef90_UPI001EE2C20A	helix-turn-helix domain-containing protein	NA
UHGV-0099376_30	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0099376_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0099376_30	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0099376_31	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0099376_31	UniRef90	UniRef90_R6T0H0	ERCC4 domain-containing protein	NA
UHGV-0099376_31	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0099376_31	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0099376_31	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0099376_31	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0099376_32	PHROG	phrog_18107	NA	unknown function
UHGV-0099376_32	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-0099376_32	Structural annotation	PF05037	NA	NA
UHGV-0099376_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099376_33	UniRef90	UniRef90_A0A373XZR2	ATP-binding protein	NA
UHGV-0099376_33	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0099376_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0099376_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0099376_40	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-0099376_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099376_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099376_40	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0099376_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099376_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099376_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099376_42	UniRef90	UniRef90_A0A373Y265	XRE family transcriptional regulator	NA
UHGV-0099376_42	eggNOG-mapper	935948.KE386495_gene1358	Helix-turn-helix XRE-family like proteins	NA
UHGV-0099376_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099376_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099376_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0099376_44	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0099376_44	UniRef90	UniRef90_UPI001A9ABD66	helix-turn-helix domain-containing protein	NA
UHGV-0099376_44	eggNOG-mapper	269799.Gmet_3438	Cupin 2, conserved barrel domain protein	NA
UHGV-0099376_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099376_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099376_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0099376_45	PHROG	phrog_7974	NA	unknown function
UHGV-0099376_45	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-0099376_45	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-0099376_45	Pfam	PF14020	NA	DUF4236
UHGV-0099376_45	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0099376_46	KOfam	K14059	int; integrase	NA
UHGV-0099376_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0099376_46	UniRef90	UniRef90_A0A1H7MU61	Site-specific recombinase XerD	NA
UHGV-0099376_46	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0099376_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099376_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099376_46	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0099376_47	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0099376_48	KOfam	K03687	GRPE; molecular chaperone GrpE	NA
UHGV-0099376_48	PHROG	phrog_12942	NA	unknown function
UHGV-0099376_48	UniRef90	UniRef90_A0A3E4SJ72	Protein GrpE	NA
UHGV-0099376_48	eggNOG-mapper	537011.PREVCOP_04049	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ	NA
UHGV-0099376_48	Pfam	PF01025	GrpE	GrpE
UHGV-0099376_48	COG	COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	NA