UHGV-0099391

Genome information

Genome length 24,626 bps

CDS count 42

Completeness 76.69% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099391
vOTU ID	vOTU-042153
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_207399
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.54
Jumbo phage	No

Genome content
Genome length	24,626 bps
GC content	57.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.14%
Average CDS length	532.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099391_2	UniRef90	UniRef90_A0A1I0D4Z7	Replication restart DNA helicase PriA	NA
UHGV-0099391_2	eggNOG-mapper	1519439.JPJG01000061_gene2007	NA	NA
UHGV-0099391_2	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0099391_3	KOfam	K06872	NA	NA
UHGV-0099391_3	UniRef90	UniRef90_A0A3D1LCG6	TPM_phosphatase domain-containing protein	NA
UHGV-0099391_3	eggNOG-mapper	1519439.JPJG01000061_gene2008	TPM domain	NA
UHGV-0099391_3	Pfam	PF04536	TPM domain	TPM_phosphatase
UHGV-0099391_3	COG	COG1512	NA	NA
UHGV-0099391_4	eggNOG-mapper	1203606.HMPREF1526_03013	NA	NA
UHGV-0099391_5	UniRef90	UniRef90_UPI00189DCC7C	NA	NA
UHGV-0099391_5	eggNOG-mapper	445975.COLSTE_02150	NA	NA
UHGV-0099391_5	Pfam	PF19789	NA	DUF6273
UHGV-0099391_5	Structural annotation	PF19789	NA	NA
UHGV-0099391_6	eggNOG-mapper	445975.COLSTE_02149	NA	NA
UHGV-0099391_6	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0099391_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0099391_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0099391_7	UniRef90	UniRef90_A0A1Y4G3H0	Reverse transcriptase domain-containing protein	NA
UHGV-0099391_7	eggNOG-mapper	445975.COLSTE_02147	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0099391_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0099391_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0099391_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0099391_7	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0099391_8	PHROG	phrog_18593	NA	unknown function
UHGV-0099391_8	UniRef90	UniRef90_B6GDG6	Carbohydrate binding domain protein	NA
UHGV-0099391_8	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0099391_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0099391_8	Structural annotation	PF14600	NA	NA
UHGV-0099391_10	PHROG	phrog_10091	holin	lysis
UHGV-0099391_10	UniRef90	UniRef90_A0A1Y4G372	Phage holin	NA
UHGV-0099391_10	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0099391_10	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0099391_10	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0099391_10	COG	COG5546	NA	NA
UHGV-0099391_10	Structural annotation	COG5546	NA	NA
UHGV-0099391_11	UniRef90	UniRef90_A0A1Y4G4Q3	Peptidase_C39_2 domain-containing protein	NA
UHGV-0099391_11	eggNOG-mapper	1280698.AUJS01000108_gene579	Papain-like cysteine protease AvrRpt2	NA
UHGV-0099391_11	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0099391_11	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0099391_11	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0099391_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0099391_12	PHROG	phrog_291	endolysin	lysis
UHGV-0099391_12	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0099391_12	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0099391_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0099391_12	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0099391_12	Pfam	PF01476	LysM domain	LysM
UHGV-0099391_12	COG	COG1388	LysM repeat	NA
UHGV-0099391_12	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0099391_13	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0099391_13	PHROG	phrog_95	integrase	integration and excision
UHGV-0099391_13	UniRef90	UniRef90_UPI00189B55FE	recombinase family protein	NA
UHGV-0099391_13	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-0099391_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0099391_13	Pfam	PF07508	Recombinase	Recombinase
UHGV-0099391_13	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0099391_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0099391_13	Structural annotation	PF00239, NF041201, COG2452	NA	NA
UHGV-0099391_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099391_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099391_15	UniRef90	UniRef90_A0A1Y4G3A4	HTH cro/C1-type domain-containing protein	NA
UHGV-0099391_15	eggNOG-mapper	482234.SCAZ3_06285	transcriptional	NA
UHGV-0099391_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099391_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0099391_15	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0099391_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099391_16	UniRef90	UniRef90_A0A1Y4G4T6	HTH cro/C1-type domain-containing protein	NA
UHGV-0099391_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0099391_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099391_21	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-0099391_24	PHROG	phrog_24189	NA	unknown function
UHGV-0099391_24	UniRef90	UniRef90_A0A1Y4G3E9	NA	NA
UHGV-0099391_24	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-0099391_24	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0099391_24	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-0099391_25	PHROG	phrog_24658	NA	unknown function
UHGV-0099391_25	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-0099391_26	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0099391_26	UniRef90	UniRef90_UPI000550874E	NA	NA
UHGV-0099391_26	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0099391_26	Pfam	PF11753	NA	DUF3310
UHGV-0099391_29	KOfam	K14059	int; integrase	NA
UHGV-0099391_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0099391_29	UniRef90	UniRef90_R7D9N8	Site-specific recombinase phage integrase family	NA
UHGV-0099391_29	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0099391_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099391_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099391_29	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0099391_32	PHROG	phrog_21723	NA	unknown function
UHGV-0099391_32	UniRef90	UniRef90_A0A7K3KYW0	Integration host factor	NA
UHGV-0099391_32	eggNOG-mapper	1033730.CAHG01000016_gene599	integration host factor	NA
UHGV-0099391_32	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0099391_32	COG	COG0099	Ribosomal protein S13	NA
UHGV-0099391_32	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0099391_33	PHROG	phrog_12588	NA	unknown function
UHGV-0099391_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099391_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099391_34	UniRef90	UniRef90_A0A1Y4GBS3	Single-stranded DNA-binding protein	NA
UHGV-0099391_34	eggNOG-mapper	445975.COLSTE_02172	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0099391_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099391_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099391_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099391_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099391_34	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0099391_35	Structural annotation	MF_01326_A, TIGR01080	NA	NA
UHGV-0099391_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0099391_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0099391_36	UniRef90	UniRef90_R7DAX0	dUTP diphosphatase	NA
UHGV-0099391_36	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0099391_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0099391_36	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0099391_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099391_36	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0099391_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099391_37	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0099391_37	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0099391_38	PHROG	phrog_1066	NA	unknown function
UHGV-0099391_38	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0099391_38	Structural annotation	TIGR01558	NA	NA
UHGV-0099391_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0099391_39	UniRef90	UniRef90_B6GDI5	Putative phage terminase, large subunit	NA
UHGV-0099391_39	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0099391_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0099391_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0099391_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0099391_39	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0099391_40	PHROG	phrog_12	portal protein	head and packaging
UHGV-0099391_40	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-0099391_40	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0099391_40	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0099391_40	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0099391_40	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0099391_41	KOfam	K06904	NA	NA
UHGV-0099391_41	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0099391_41	UniRef90	UniRef90_R7D7H1	Phage prohead protease HK97 family	NA
UHGV-0099391_41	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0099391_41	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0099391_41	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0099391_41	COG	COG3740	Phage head maturation protease	NA
UHGV-0099391_41	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0099391_42	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0099391_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA