UHGV-0099430

Genome information

vOTU vOTU-020170

Genome length 33,412 bps

CDS count 43

Completeness 88.44% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099430
vOTU ID	vOTU-020170
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_224867
BioSample	SAMEA3708553
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.91
Jumbo phage	No

Genome content
Genome length	33,412 bps
GC content	36.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.23%
Average CDS length	727.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099430_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0099430_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0099430_1	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0099430_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0099430_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0099430_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0099430_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0099430_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0099430_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0099430_2	PHROG	phrog_1847	NA	unknown function
UHGV-0099430_2	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0099430_2	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0099430_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0099430_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0099430_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0099430_3	PHROG	phrog_20886	NA	unknown function
UHGV-0099430_3	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0099430_3	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0099430_3	Structural annotation	PF06114	NA	NA
UHGV-0099430_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099430_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0099430_4	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-0099430_4	eggNOG-mapper	1211819.CALK01000005_gene2436	Peptidase S24-like	NA
UHGV-0099430_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099430_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0099430_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0099430_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0099430_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099430_5	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0099430_5	eggNOG-mapper	1161413.HMPREF1510_1296	Transcriptional regulator	NA
UHGV-0099430_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099430_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099430_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0099430_8	Structural annotation	NF037954	NA	NA
UHGV-0099430_11	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0099430_11	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0099430_11	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0099430_12	PHROG	phrog_20040	NA	unknown function
UHGV-0099430_12	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0099430_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0099430_15	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0099430_15	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0099430_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0099430_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0099430_16	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0099430_16	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0099430_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0099430_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0099430_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0099430_17	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0099430_18	PHROG	phrog_8470	NA	unknown function
UHGV-0099430_18	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0099430_18	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0099430_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0099430_18	Structural annotation	PF14284	NA	NA
UHGV-0099430_19	PHROG	phrog_15077	NA	unknown function
UHGV-0099430_19	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0099430_19	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0099430_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0099430_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0099430_20	UniRef90	UniRef90_UPI0002D32D58	NA	NA
UHGV-0099430_20	eggNOG-mapper	1095772.CAHH01000052_gene252	NA	NA
UHGV-0099430_20	Pfam	PF14359	NA	DUF4406
UHGV-0099430_20	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0099430_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099430_21	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0099430_21	Structural annotation	PF02996	NA	NA
UHGV-0099430_22	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0099430_22	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0099430_22	eggNOG-mapper	1139219.I569_01387	Helix-turn-helix of insertion element transposase	NA
UHGV-0099430_22	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0099430_22	Structural annotation	PF13022	NA	NA
UHGV-0099430_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099430_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0099430_23	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0099430_23	eggNOG-mapper	1294142.CINTURNW_1023	Phage terminase, large subunit, PBSX family	NA
UHGV-0099430_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0099430_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099430_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0099430_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099430_24	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0099430_24	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0099430_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099430_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099430_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099430_25	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0099430_25	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0099430_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099430_25	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0099430_25	Structural annotation	PF06152	NA	NA
UHGV-0099430_27	PHROG	phrog_872	NA	unknown function
UHGV-0099430_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0099430_27	dbAPIS	APIS052	NA	NA
UHGV-0099430_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0099430_28	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0099430_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0099430_29	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0099430_29	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0099430_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099430_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099430_30	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0099430_31	PHROG	phrog_8710	NA	unknown function
UHGV-0099430_31	eggNOG-mapper	483218.BACPEC_01152	NA	NA
UHGV-0099430_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0099430_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099430_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0099430_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0099430_33	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0099430_33	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0099430_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0099430_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0099430_34	PHROG	phrog_820	major tail protein	tail
UHGV-0099430_34	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0099430_34	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0099430_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0099430_35	PHROG	phrog_8300	NA	unknown function
UHGV-0099430_35	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0099430_35	Structural annotation	PF06896	NA	NA
UHGV-0099430_36	PHROG	phrog_8355	NA	unknown function
UHGV-0099430_36	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0099430_36	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0099430_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099430_36	Structural annotation	PF06854	NA	NA
UHGV-0099430_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099430_37	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0099430_37	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0099430_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0099430_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0099430_38	PHROG	phrog_1194	NA	unknown function
UHGV-0099430_38	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0099430_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0099430_39	PHROG	phrog_1401	NA	unknown function
UHGV-0099430_39	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0099430_39	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0099430_39	Structural annotation	PF07761	NA	NA
UHGV-0099430_40	PHROG	phrog_6616	tail protein	tail
UHGV-0099430_40	UniRef90	UniRef90_UPI001BA4B99A	tail fiber domain-containing protein	NA
UHGV-0099430_40	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0099430_40	COG	COG4926	Phage-related protein	NA
UHGV-0099430_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0099430_41	PHROG	phrog_2566	NA	unknown function
UHGV-0099430_41	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0099430_42	PHROG	phrog_199	holin	lysis
UHGV-0099430_42	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0099430_42	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0099430_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0099430_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0099430_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0099430_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0099430_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0099430_43	PHROG	phrog_291	endolysin	lysis
UHGV-0099430_43	UniRef90	UniRef90_A0A174PB89	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0099430_43	eggNOG-mapper	469596.HMPREF9488_01959	Glycosyl hydrolase family 25	NA
UHGV-0099430_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0099430_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0099430_43	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA