UHGV-0099467

Genome information

Genome length 23,343 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099467
vOTU ID	vOTU-045422
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230241
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.6
Jumbo phage	No

Genome content
Genome length	23,343 bps
GC content	36.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.37%
Average CDS length	450.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099467_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0099467_3	UniRef90	UniRef90_A0A0N6WMQ5	Terminase	NA
UHGV-0099467_3	eggNOG-mapper	1566990.A0A0A0YRS2_9CAUD	Phage Terminase	NA
UHGV-0099467_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0099467_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0099467_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0099467_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0099467_5	PHROG	phrog_7887	endolysin	lysis
UHGV-0099467_5	UniRef90	UniRef90_A0A2Z2GUJ4	Peptidase C51 domain-containing protein	NA
UHGV-0099467_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0099467_5	COG	COG3103	NA	NA
UHGV-0099467_6	PHROG	phrog_1379	NA	unknown function
UHGV-0099467_6	UniRef90	UniRef90_A0A0B8QX14	FOG: TPR repeat	NA
UHGV-0099467_6	eggNOG-mapper	1262535.R9R178_9CAUD	NA	NA
UHGV-0099467_7	PHROG	phrog_9145	tail length tape measure protein	tail
UHGV-0099467_7	UniRef90	UniRef90_A0A0N9BAU6	Minor tail protein	NA
UHGV-0099467_7	eggNOG-mapper	936154.STP_0847	Transglycosylase SLT domain	NA
UHGV-0099467_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0099467_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0099467_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0099467_7	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0099467_9	PHROG	phrog_2634	major tail protein	tail
UHGV-0099467_9	UniRef90	UniRef90_A0A0N9BAU7	Major tail shaft protein	NA
UHGV-0099467_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0099467_11	KOfam	K06904	NA	NA
UHGV-0099467_11	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0099467_11	UniRef90	UniRef90_A0A0N9BAU1	Putative major capsid protein	NA
UHGV-0099467_11	Pfam	PF06673	Lactococcus lactis bacteriophage major capsid protein	L_lactis_ph-MCP
UHGV-0099467_11	Structural annotation	PF06673, PF04586, MF_04133, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-0099467_14	PHROG	phrog_827	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099467_14	UniRef90	UniRef90_A0A0N9BAV8	Holin	NA
UHGV-0099467_14	eggNOG-mapper	1165134.H9ED59_9CAUD	Lactococcus phage M3 protein	NA
UHGV-0099467_14	Pfam	PF07066	Lactococcus phage M3 protein	DUF3882
UHGV-0099467_14	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0099467_15	PHROG	phrog_10074	NA	unknown function
UHGV-0099467_15	Structural annotation	PF01206, NF041048	NA	NA
UHGV-0099467_22	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0099467_22	PHROG	phrog_1284	NA	unknown function
UHGV-0099467_22	UniRef90	UniRef90_A0A0N9BAT8	Putative DNA polymerase	NA
UHGV-0099467_22	eggNOG-mapper	1165143.H9EEL3_9CAUD	AAA domain	NA
UHGV-0099467_22	Pfam	PF13481	AAA domain	AAA_25
UHGV-0099467_22	Structural annotation	PF03796, MF_01498, TIGR00416, COG3598	NA	NA
UHGV-0099467_24	PHROG	phrog_1430	NA	unknown function
UHGV-0099467_24	eggNOG-mapper	1262535.R9R291_9CAUD	NA	NA
UHGV-0099467_25	PHROG	phrog_1225	NA	unknown function
UHGV-0099467_25	UniRef90	UniRef90_A6MA89	Gp025	NA
UHGV-0099467_25	Pfam	PF11753	NA	DUF3310
UHGV-0099467_26	PHROG	phrog_1632	NA	unknown function
UHGV-0099467_27	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099467_27	UniRef90	UniRef90_UPI000A63D252	ERF family protein	NA
UHGV-0099467_27	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-0099467_27	Pfam	PF04404	ERF superfamily	ERF
UHGV-0099467_28	PHROG	phrog_1278	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099467_28	UniRef90	UniRef90_A0A678VHL9	Putative single stranded DNA-binding protein	NA
UHGV-0099467_28	eggNOG-mapper	1165143.H9EEK6_9CAUD	Pfam:Phage_SSB	NA
UHGV-0099467_28	Pfam	PF16773	Lactococcus phage single-stranded DNA binding protein	Phage_SSB
UHGV-0099467_28	Structural annotation	PF16773, NF005260	NA	NA
UHGV-0099467_29	PHROG	phrog_1295	NA	unknown function
UHGV-0099467_30	PHROG	phrog_1317	NA	unknown function
UHGV-0099467_30	eggNOG-mapper	1262535.R9R123_9CAUD	NA	NA
UHGV-0099467_34	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099467_34	UniRef90	UniRef90_A0A0N9BAU5	HNH endonuclease	NA
UHGV-0099467_34	eggNOG-mapper	213774.R9R2E2_9CAUD	HNH endonuclease	NA
UHGV-0099467_34	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0099467_34	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0099467_34	Structural annotation	PF13392, PF20987, TIGR01453	NA	NA
UHGV-0099467_40	Pfam	PF08410	NA	DUF1737