UHGV-0099488

Genome information

Genome length 40,972 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099488
vOTU ID	vOTU-012725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221036
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.63
Jumbo phage	No

Genome content
Genome length	40,972 bps
GC content	50.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.22%
Average CDS length	544.78 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099488_2	PHROG	phrog_20016	NA	unknown function
UHGV-0099488_2	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0099488_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0099488_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0099488_3	PHROG	phrog_16490	NA	unknown function
UHGV-0099488_3	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0099488_4	PHROG	phrog_22984	NA	unknown function
UHGV-0099488_5	PHROG	phrog_21718	NA	unknown function
UHGV-0099488_5	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0099488_6	PHROG	phrog_3754	NA	unknown function
UHGV-0099488_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0099488_7	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0099488_7	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0099488_7	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0099488_8	PHROG	phrog_13256	NA	unknown function
UHGV-0099488_8	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0099488_9	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0099488_10	KOfam	K07273	acm; lysozyme	NA
UHGV-0099488_10	PHROG	phrog_291	endolysin	lysis
UHGV-0099488_10	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0099488_10	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-0099488_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0099488_10	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0099488_10	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0099488_12	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0099488_12	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0099488_12	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0099488_12	Structural annotation	PF10651	NA	NA
UHGV-0099488_15	PHROG	phrog_9534	head protein	head and packaging
UHGV-0099488_15	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0099488_15	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0099488_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0099488_16	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0099488_16	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0099488_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0099488_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0099488_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0099488_17	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0099488_17	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0099488_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0099488_17	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0099488_18	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0099488_18	UniRef90	UniRef90_UPI00191AC1ED	phage tail tape measure protein	NA
UHGV-0099488_18	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0099488_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0099488_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0099488_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0099488_18	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0099488_20	PHROG	phrog_18646	NA	unknown function
UHGV-0099488_21	PHROG	phrog_885	major tail protein	tail
UHGV-0099488_21	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0099488_21	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0099488_21	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0099488_22	Structural annotation	PF11367	NA	NA
UHGV-0099488_23	PHROG	phrog_17977	NA	unknown function
UHGV-0099488_23	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0099488_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0099488_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0099488_25	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0099488_25	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0099488_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0099488_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099488_26	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0099488_26	Structural annotation	PF06810	NA	NA
UHGV-0099488_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0099488_27	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0099488_27	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0099488_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0099488_28	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0099488_28	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0099488_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0099488_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0099488_29	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0099488_29	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0099488_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0099488_29	COG	COG2369	NA	NA
UHGV-0099488_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0099488_30	eggNOG-mapper	706437.HMPREF0813_02005	NA	NA
UHGV-0099488_31	PHROG	phrog_8680	NA	unknown function
UHGV-0099488_31	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0099488_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0099488_31	Pfam	PF14386	NA	DUF4417
UHGV-0099488_31	Structural annotation	PF14386	NA	NA
UHGV-0099488_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0099488_32	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0099488_32	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099488_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099488_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0099488_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099488_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0099488_33	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0099488_33	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0099488_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0099488_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0099488_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099488_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099488_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0099488_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0099488_34	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0099488_34	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0099488_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0099488_34	Structural annotation	PF16677	NA	NA
UHGV-0099488_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099488_36	Pfam	PF07374	NA	DUF1492
UHGV-0099488_36	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0099488_36	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0099488_39	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0099488_40	PHROG	phrog_9958	NA	unknown function
UHGV-0099488_40	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0099488_40	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0099488_40	Structural annotation	PF19789	NA	NA
UHGV-0099488_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0099488_45	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099488_45	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0099488_45	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0099488_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0099488_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0099488_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0099488_48	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0099488_48	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0099488_48	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0099488_48	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0099488_48	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0099488_48	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0099488_48	COG	COG0305	Replicative DNA helicase	NA
UHGV-0099488_48	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0099488_49	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0099488_49	UniRef90	UniRef90_A0A3E3EH62	POU-specific domain-containing protein	NA
UHGV-0099488_49	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0099488_49	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0099488_50	PHROG	phrog_4973	NA	unknown function
UHGV-0099488_50	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0099488_50	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0099488_50	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0099488_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099488_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099488_51	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-0099488_51	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0099488_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099488_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099488_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099488_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099488_51	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0099488_52	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099488_52	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-0099488_52	eggNOG-mapper	649831.L083_0356	HNH endonuclease	NA
UHGV-0099488_52	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0099488_53	PHROG	phrog_7566	NA	unknown function
UHGV-0099488_53	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0099488_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0099488_54	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0099488_54	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0099488_54	Structural annotation	PF05772	NA	NA
UHGV-0099488_55	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0099488_58	PHROG	phrog_4433	NA	unknown function
UHGV-0099488_58	UniRef90	UniRef90_A0A1V5NWB8	Collagen triple helix repeat (20 copies)	NA
UHGV-0099488_58	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0099488_58	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0099488_58	Structural annotation	NF007410	NA	NA
UHGV-0099488_60	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0099488_60	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0099488_61	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0099488_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0099488_61	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0099488_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099488_62	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0099488_62	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0099488_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099488_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099488_62	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0099488_64	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0099488_65	KOfam	K14059	int; integrase	NA
UHGV-0099488_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0099488_65	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0099488_65	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0099488_65	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0099488_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099488_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099488_65	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0099488_67	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0099488_68	Structural annotation	PF12510	NA	NA
UHGV-0099488_69	PHROG	phrog_20016	NA	unknown function
UHGV-0099488_69	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0099488_69	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0099488_69	Structural annotation	PF18573, NF033147	NA	NA