UHGV-0099500

Genome information

vOTU vOTU-042071

Genome length 34,068 bps

CDS count 54

Completeness 74.94% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099500
vOTU ID	vOTU-042071
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203612
BioSample	SAMEA3449246
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.64
Jumbo phage	No

Genome content
Genome length	34,068 bps
GC content	48.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.88%
Average CDS length	576.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099500_1	eggNOG-mapper	1487921.DP68_11225	Phage antirepressor protein	NA
UHGV-0099500_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0099500_3	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0099500_3	PHROG	phrog_12747	NA	unknown function
UHGV-0099500_3	UniRef90	UniRef90_I5AQA7	Protein involved in cell division	NA
UHGV-0099500_3	eggNOG-mapper	633697.EubceDRAFT1_0116	Fic/DOC family	NA
UHGV-0099500_3	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0099500_3	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0099500_3	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0099500_4	PHROG	phrog_2310	NA	unknown function
UHGV-0099500_6	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0099500_6	Structural annotation	PF16323, PF16974, NF010681, COG3401	NA	NA
UHGV-0099500_7	PHROG	phrog_521	tail protein	tail
UHGV-0099500_7	UniRef90	UniRef90_UPI00189A40DF	NA	NA
UHGV-0099500_7	eggNOG-mapper	1121334.KB911071_gene1972	NA	NA
UHGV-0099500_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0099500_7	COG	COG3778	NA	NA
UHGV-0099500_7	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0099500_8	PHROG	phrog_6	baseplate protein	tail
UHGV-0099500_8	UniRef90	UniRef90_UPI0018985CC3	baseplate J/gp47 family protein	NA
UHGV-0099500_8	eggNOG-mapper	1105031.HMPREF1141_1407	Baseplate J-like protein	NA
UHGV-0099500_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0099500_8	COG	COG3299	NA	NA
UHGV-0099500_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0099500_9	PHROG	phrog_120	baseplate protein	tail
UHGV-0099500_9	UniRef90	UniRef90_UPI0005A8315B	NA	NA
UHGV-0099500_9	eggNOG-mapper	1121334.KB911071_gene1974	NA	NA
UHGV-0099500_9	Pfam	PF10934	NA	DUF2634
UHGV-0099500_9	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0099500_9	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0099500_10	eggNOG-mapper	1121334.KB911071_gene1975	NA	NA
UHGV-0099500_10	Pfam	PF10844	NA	DUF2577
UHGV-0099500_12	PHROG	phrog_400	tail protein	tail
UHGV-0099500_12	UniRef90	UniRef90_H5XZT6	Phage late control D protein (GPD)	NA
UHGV-0099500_12	eggNOG-mapper	1121334.KB911071_gene1976	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0099500_12	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0099500_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0099500_13	PHROG	phrog_380	endolysin	lysis
UHGV-0099500_13	eggNOG-mapper	1105031.HMPREF1141_0999	NA	NA
UHGV-0099500_14	eggNOG-mapper	1232449.BAHV02000008_gene641	sister chromatid segregation	NA
UHGV-0099500_14	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0099500_14	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-0099500_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0099500_15	UniRef90	UniRef90_A0A6N8HZT8	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0099500_15	eggNOG-mapper	1105031.HMPREF1141_0996	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0099500_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0099500_15	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0099500_16	PHROG	phrog_365	tail protein	tail
UHGV-0099500_16	UniRef90	UniRef90_A0A1G9Z2X5	Phage tail tube protein	NA
UHGV-0099500_16	eggNOG-mapper	1232449.BAHV02000008_gene639	Phage tail tube protein	NA
UHGV-0099500_16	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0099500_16	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0099500_17	PHROG	phrog_279	tail sheath	tail
UHGV-0099500_17	UniRef90	UniRef90_UPI00082FBA50	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0099500_17	eggNOG-mapper	1121334.KB911071_gene1981	Phage tail sheath C-terminal domain	NA
UHGV-0099500_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0099500_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0099500_17	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0099500_18	eggNOG-mapper	1105031.HMPREF1141_0993	NA	NA
UHGV-0099500_18	Pfam	PF20765	NA	DUF6838
UHGV-0099500_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0099500_19	UniRef90	UniRef90_UPI00082F3F7B	HK97 gp10 family phage protein	NA
UHGV-0099500_19	eggNOG-mapper	318464.IO99_00605	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0099500_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0099500_19	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0099500_20	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0099500_20	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0099500_22	PHROG	phrog_283	major head protein	head and packaging
UHGV-0099500_22	UniRef90	UniRef90_A0A174ACN4	p22 coat protein-gene protein 5	NA
UHGV-0099500_22	eggNOG-mapper	1131462.DCF50_p1388	P22 coat protein - gene protein 5	NA
UHGV-0099500_22	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0099500_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099500_23	UniRef90	UniRef90_R6C6L8	Fibronectin autolysin	NA
UHGV-0099500_23	Structural annotation	PF06810	NA	NA
UHGV-0099500_24	UniRef90	UniRef90_D5GY03	Conserved protein	NA
UHGV-0099500_24	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0099500_24	Structural annotation	PF20111	NA	NA
UHGV-0099500_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0099500_25	UniRef90	UniRef90_A0A410PZY6	Phage_Mu_F domain-containing protein	NA
UHGV-0099500_25	eggNOG-mapper	1232449.BAHV02000008_gene629	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0099500_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0099500_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0099500_25	COG	COG2369	NA	NA
UHGV-0099500_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0099500_26	UniRef90	UniRef90_A0A1G9Z0H1	Phage portal protein, SPP1 family	NA
UHGV-0099500_26	eggNOG-mapper	1232449.BAHV02000008_gene628	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099500_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099500_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0099500_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099500_27	PHROG	phrog_10250	NA	unknown function
UHGV-0099500_27	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0099500_27	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0099500_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0099500_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099500_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099500_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0099500_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0099500_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0099500_28	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0099500_28	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0099500_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0099500_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0099500_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0099500_29	PHROG	phrog_33130	NA	unknown function
UHGV-0099500_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0099500_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099500_30	UniRef90	UniRef90_A0A6N2R4S8	Sigma70_r4 domain-containing protein	NA
UHGV-0099500_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0099500_30	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-0099500_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0099500_33	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0099500_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0099500_33	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0099500_36	PHROG	phrog_22543	NA	unknown function
UHGV-0099500_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0099500_40	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0099500_40	UniRef90	UniRef90_R6BMV4	Phage_rep_org_N domain-containing protein	NA
UHGV-0099500_40	eggNOG-mapper	1244083.CSUNSWCD_1478	NA	NA
UHGV-0099500_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0099500_40	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0099500_40	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0099500_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099500_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099500_41	UniRef90	UniRef90_A0A7C7EMB2	Single-stranded DNA-binding protein	NA
UHGV-0099500_41	eggNOG-mapper	537013.CLOSTMETH_00062	Single-stranded DNA-binding protein	NA
UHGV-0099500_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099500_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099500_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099500_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099500_41	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0099500_42	PHROG	phrog_398	NA	unknown function
UHGV-0099500_42	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0099500_42	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0099500_42	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0099500_42	Structural annotation	PF16784	NA	NA
UHGV-0099500_43	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099500_43	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0099500_43	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0099500_43	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0099500_44	Structural annotation	PF14445	NA	NA
UHGV-0099500_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0099500_48	Structural annotation	PF21291, TIGR00673, COG3655	NA	NA
UHGV-0099500_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0099500_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0099500_49	UniRef90	UniRef90_K0ZBQ0	Bro-N domain-containing protein	NA
UHGV-0099500_49	eggNOG-mapper	883077.HMPREF9241_01671	BRO family, N-terminal domain	NA
UHGV-0099500_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0099500_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0099500_49	COG	COG3617	Prophage antirepressor	NA
UHGV-0099500_49	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0099500_50	UniRef90	UniRef90_D9R8Y9	DNA binding domain protein, excisionase family	NA
UHGV-0099500_50	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0099500_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0099500_50	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0099500_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0099500_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099500_51	UniRef90	UniRef90_A0A414AEF9	XRE family transcriptional regulator	NA
UHGV-0099500_51	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0099500_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099500_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0099500_52	PHROG	phrog_19315	NA	unknown function
UHGV-0099500_52	UniRef90	UniRef90_A0A096DF46	Peptidase_M78 domain-containing protein	NA
UHGV-0099500_52	eggNOG-mapper	742738.HMPREF9460_01346	IrrE N-terminal-like domain	NA
UHGV-0099500_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0099500_52	COG	COG1592	Rubrerythrin	NA
UHGV-0099500_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0099500_53	KOfam	K14059	int; integrase	NA
UHGV-0099500_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0099500_53	UniRef90	UniRef90_R6BQB5	Putative integrase	NA
UHGV-0099500_53	eggNOG-mapper	1007096.BAGW01000023_gene159	Phage integrase family	NA
UHGV-0099500_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0099500_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099500_53	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0099500_54	KOfam	K03664	smpB; SsrA-binding protein	NA
UHGV-0099500_54	PHROG	phrog_6791	NA	unknown function
UHGV-0099500_54	UniRef90	UniRef90_R6BFX2	SsrA-binding protein	NA
UHGV-0099500_54	eggNOG-mapper	1410670.JHXF01000009_gene259	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0099500_54	Pfam	PF01668	SmpB protein	SmpB
UHGV-0099500_54	NCBIFam	NF003843.0	SsrA-binding protein SmpB	NA
UHGV-0099500_54	COG	COG0691	tmRNA-binding protein	NA
UHGV-0099500_54	HAMAP	MF_00023	SsrA-binding protein [smpB]	NA
UHGV-0099500_54	Structural annotation	PF01668, MF_00023, NF003843, COG0691	NA	NA